PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03171g00029.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 528aa    MW: 59270.9 Da    PI: 6.1534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03171g00029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-1171112446
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               W ++E+ ll+++++++G  +W+ +a+++g +++  qc++++++
  Peinf101Scf03171g00029.1  71 WNADEEMLLLEGIEMYGLANWAEVAEHVG-TKSKMQCIDHYNS 112
                               *****************************.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250245.7E-1573528IPR016827Transcriptional adaptor 2
SMARTSM002916.2E-10752IPR000433Zinc finger, ZZ-type
PfamPF005692.1E-10952IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.9361154IPR000433Zinc finger, ZZ-type
CDDcd023359.23E-241159No hitNo description
SuperFamilySSF578501.65E-131174No hitNo description
PROSITE patternPS0135701340IPR000433Zinc finger, ZZ-type
SuperFamilySSF466898.22E-1364117IPR009057Homeodomain-like
PROSITE profilePS5129321.09466118IPR017884SANT domain
SMARTSM007172.7E-1167116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-870113IPR009057Homeodomain-like
CDDcd001672.07E-1171113No hitNo description
PfamPF002494.8E-1171112IPR001005SANT/Myb domain
SuperFamilySSF466894.3E-18434525IPR009057Homeodomain-like
PROSITE profilePS509348.878442528IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
QILSDGKKAL YHCNYCNKDI SGRIRIKCVV CSDFDLCVEC FSVGAEVHPH KSNHLYRVMD  60
NLSFPLICAD WNADEEMLLL EGIEMYGLAN WAEVAEHVGT KSKMQCIDHY NSIYINSSCF  120
PTPDMSHVMG KNKEELVAMA KEQGHAAPGG VNVKEESPLS AKIKMEDQRE ENSAGLSSEL  180
VSVGGSASGT LSGAGKRTSG ILHSKDSHDS IKVEGCPADR SVGEKKPRTS VDEGPSMTEL  240
SGYNSKREEF EIEYDNDAEQ MLADMEFKET DSNAERELKL RVLRVYSKRL DERKRRKKFI  300
LERNLLHPDP FEKDLTPEEK DICRCYRVFM RFNSKEEHED FLRSIIEEHR MIKRIQDLQD  360
ARAAGCRTSA EAEKYVEQKR KRESEENARG LKESSQNGLS GKYLQRAGHL KVEHDSSPRG  420
VARGPEMLDS SCKDLSSTTA QHGVGSALDV WDVSGFVGAE LLSEADKRLC DENRILPTHY  480
LNMLQTMSMG ILSGNITKKS DAHGLFNVDP NKVDKVYEML VKKGIAQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C1e-34111265120Transcriptional adapter 2
6cw3_E1e-34111265120Transcriptional adapter 2
6cw3_G1e-34111265120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146080.0BT014608.1 Lycopersicon esculentum clone 134091F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803647.10.0PREDICTED: transcriptional adapter ADA2-like isoform X1
RefseqXP_016449024.10.0PREDICTED: transcriptional adapter ADA2-like isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A1S3YAA00.0A0A1S3YAA0_TOBAC; Transcriptional adapter
TrEMBLA0A1U7YHR60.0A0A1U7YHR6_NICSY; Transcriptional adapter
STRINGXP_009803647.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24471215
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]