PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02707g01029.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 319aa    MW: 35972.3 Da    PI: 5.2857
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02707g01029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.22.5e-2810982103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F+ k+y++++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+Y    v+ ++         weF++++F
  Peinf101Scf02707g01029.1  10 FVLKTYQMVNDPKIDGLIAWGAANNSFIVVEPLDFSQRILPVYFKHNNFSSFVRQLNTY----VDPDK---------WEFANEWF 81 
                               9********************999***********************************....55555.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+++ll++i r+k++
  Peinf101Scf02707g01029.1  82 LRGQTHLLKNIVRRKHN 98 
                               *************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-39695IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-29795IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.0E-30895IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-221095IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-111033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-114860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-116173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEANNIIAPF VLKTYQMVND PKIDGLIAWG AANNSFIVVE PLDFSQRILP VYFKHNNFSS  60
FVRQLNTYVD PDKWEFANEW FLRGQTHLLK NIVRRKHNRS SYSSHQKQSD ESEDEEILTE  120
ISRLKQEQKA LEQEVENMTR RLEATEKRPQ QMMAFLCKVV EDPEILPRIL LEKERCKRVS  180
LINREKKRRV MICNNNSTST SSVKSEEEVG GPILGTTSSF HSPDTNFDKD TFCQSSPSSE  240
TPSTAAWLSG RPMITYETYG SCPAMSSSMS SGSSESGGYT AAPPPFEAFS GYYVGEGSAA  300
TEEVSPPPYP FSLFGGGFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-1979526129Heat shock factor protein 1
5d5v_B9e-1979526129Heat shock factor protein 1
5d5v_D9e-1979526129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-66HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755246e-66HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770587.11e-175PREDICTED: heat stress transcription factor C-1
RefseqXP_016479969.11e-175PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV521e-86HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1S4ATG31e-174A0A1S4ATG3_TOBAC; heat stress transcription factor C-1-like
TrEMBLA0A1U7VRR71e-174A0A1U7VRR7_NICSY; heat stress transcription factor C-1
STRINGXP_009770587.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-88heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]