PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02339g08015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23863.5 Da PI: 6.2856 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.6e-10 | 53 | 101 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er RR ++ + ++ L++l+P+ + +s K + i+ + ++YIk L+ Peinf101Scf02339g08015.1 53 PQIKERERRGKMADMYSVLQSLVPSlS---NSHKATREKIVAESTDYIKRLE 101 5688*********************55...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.687 | 48 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.21E-8 | 48 | 105 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-13 | 50 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-12 | 51 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-6 | 54 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 10.348 | 145 | 210 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MWQEIMLKEE TEEEEIEKLF MGVMEGYKDS CMPPLTDFCN INNEMACSSK ASPQIKERER 60 RGKMADMYSV LQSLVPSLSN SHKATREKIV AESTDYIKRL EEEVSRLENL KKSCLGKVVV 120 DKPALSQCRN RVSSVNVTVS KGLAFFGIQF QLNQGLMTKI FWVLDKHQAE VLAANISVSE 180 HRLATLTVTV IIGNNDSNTI ENIRRELLLF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630063.1 | 1e-98 | PREDICTED: uncharacterized protein LOC104120081 | ||||
Refseq | XP_016496901.1 | 1e-98 | PREDICTED: uncharacterized protein LOC107815786 | ||||
TrEMBL | A0A1S4C726 | 3e-97 | A0A1S4C726_TOBAC; uncharacterized protein LOC107815786 | ||||
STRING | XP_009630063.1 | 4e-98 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13248 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 3e-07 | bHLH family protein |