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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Peinf101Scf02013g00005.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family | NAC | ||||||||
| Protein Properties | Length: 312aa MW: 36684.2 Da PI: 8.8661 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 151.4 | 4.4e-47 | 76 | 201 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85
ppG+rF P deel+++yL+kkv +++l+ + i ev++y++ P++L k +ekewyfF++rd+ky++g+r+nra+ +gyWka
Peinf101Scf02013g00005.1 76 PPGYRFCPYDEELIMHYLRKKVMNQPLPH-DKIIEVNLYQHSPQELSeKYPVLGEKEWYFFTPRDRKYPNGNRPNRAAGTGYWKA 159
9***************************9.7799************9344444899***************************** PP
NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
tg dk+++ k+ +vg +k Lvfy+g+ pkg kt+W+mhe+r+
Peinf101Scf02013g00005.1 160 TGADKPIKY-KDVKVGFRKALVFYEGKPPKGDKTNWIMHEFRV 201
*********.8999***************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 1.96E-57 | 72 | 227 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 55.03 | 75 | 227 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.4E-25 | 76 | 201 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 312 aa Download sequence Send to blast |
MEIEQSNAQL TASSWNATTR NPQIQEPNKQ KQVDEDEKVL IVKPNSNDSL SYETKLKLNA 60 KANIRKDYVD DNFMFPPGYR FCPYDEELIM HYLRKKVMNQ PLPHDKIIEV NLYQHSPQEL 120 SEKYPVLGEK EWYFFTPRDR KYPNGNRPNR AAGTGYWKAT GADKPIKYKD VKVGFRKALV 180 FYEGKPPKGD KTNWIMHEFR VNESRRVKQN AKDMRLDDWV LCRIYKKVDK SFKSTRKEHE 240 QQYASRSCSS VGKMDNCDYE GTVDSSIVAS QNFEPPYQYD ITFDDHIMDY TKYNPDYFSH 300 SLGYGARSNY GM |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3ulx_A | 2e-57 | 75 | 227 | 15 | 168 | Stress-induced transcription factor NAC1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. | |||||
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:26518251). Induced by salinity and osmotic stress, and during leaf senescence (PubMed:27388337). {ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016546854.1 | 1e-152 | PREDICTED: NAC domain-containing protein 72-like | ||||
| Swissprot | A0SPJ6 | 2e-63 | NAMB2_TRITD; NAC transcription factor NAM-B2 | ||||
| Swissprot | Q9CAR0 | 6e-64 | NAC32_ARATH; NAC transcription factor 32 | ||||
| TrEMBL | A0A2G2YFZ3 | 1e-151 | A0A2G2YFZ3_CAPAN; NAC transcription factor | ||||
| STRING | XP_009759087.1 | 1e-150 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA746 | 24 | 103 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G77450.1 | 2e-66 | NAC domain containing protein 32 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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