PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01997g03034.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 323aa    MW: 36213.1 Da    PI: 9.5279
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01997g03034.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-1360104147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               r +WT +E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Peinf101Scf01997g03034.1  60 RESWTDQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 104
                               789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1754110IPR009057Homeodomain-like
PROSITE profilePS5129415.01455109IPR017930Myb domain
TIGRFAMsTIGR015572.5E-1858107IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-658110IPR009057Homeodomain-like
SMARTSM007171.4E-1059107IPR001005SANT/Myb domain
PfamPF002499.0E-1160104IPR001005SANT/Myb domain
CDDcd001675.19E-862105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVSVYSTPPP GQDLYYSTTI GDPMMRMGLP GLTNNGAGIH TGLDEHNKKT RKPYTITKSR  60
ESWTDQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTSEHVPPP  120
RPKRKAAHPY PQKAPKKAVV SQVNRPFQPQ GALPELGFVI GPDSLSVPGN TINFSPWTYD  180
NVPAISTTHM RKDDTQLSSG PVTGNCSTSS NESMPSFCTT KESNDQKENK KHMKVMPDFA  240
QVYSFIGSVF DPSTRDHLGR LKQMDPIDVQ TALMLMKNLS FNLLSPEFED HRRLLSSYGL  300
GAEKDKIDSP IKTDFRENAI PTV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776267.10.0PREDICTED: protein REVEILLE 6 isoform X3
SwissprotQ8H0W35e-94RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1U7W8D50.0A0A1U7W8D5_NICSY; protein REVEILLE 6 isoform X3
STRINGXP_009617756.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.25e-82MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]