PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01996g01032.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 426aa MW: 49149.7 Da PI: 9.6177

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01996g01032.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7.3e-27	54	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 kfY +YA++ GFsvr+ + +ks+++++i+ ++fvCskeg+r++++ + ++r+r +tr gCk l v+k+++g+w+v +l++eH Peinf101Scf01996g01032.1 54 KFYLDYAHRNGFSVRRGRITKSRKDKSIIGQEFVCSKEGFRRKKNLE---SNRPRDVTREGCKVLLYVSKKEEGNWVVCRLVSEH 135 6***************************************98777...999**************************** PP FAR1 86 nHela 90 nHela Peinf101Scf01996g01032.1 136 NHELA 140 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-24	54	140	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.5E-6	185	219	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.078	185	221	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.001	196	223	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MENSNLDEQN IKGVEVRLEE SDMDGPEQAP YVGVENSREP YIGMDFQSLD DSFKFYLDYA 60 HRNGFSVRRG RITKSRKDKS IIGQEFVCSK EGFRRKKNLE SNRPRDVTRE GCKVLLYVSK 120 KEEGNWVVCR LVSEHNHELA SPNSQKFLRS KRKKSEAQKS LIDLLDSSGV RPSKIASFQR 180 QKPVYIVSLD LENRSAICSC HKFEFMGILC RHVLMIFIKK RIHSLPTCYL LDRWTRNATK 240 EKIDEHQNGT KILKPSVSWF NNIMMHSIGL SERATRSEKH YLFAHQRLLQ LCEELDELPY 300 EFEKDCVSGD QVSAPNIESN SFEHSQNFTL LDPPRAINKG RPRSLRMKGS LESTRKTIKG 360 SSLKQKGQSR STKLKNKETR LNSNAEAEQR STVTPVNEAR AMSQQYAESY QGYVENTGYT 420 YPSSFM

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MENSNLDEQN IKGVEVRLEE SDMDGPEQAP YVGVENSREP YIGMDFQSLD DSFKFYLDYA  60
HRNGFSVRRG RITKSRKDKS IIGQEFVCSK EGFRRKKNLE SNRPRDVTRE GCKVLLYVSK  120
KEEGNWVVCR LVSEHNHELA SPNSQKFLRS KRKKSEAQKS LIDLLDSSGV RPSKIASFQR  180
QKPVYIVSLD LENRSAICSC HKFEFMGILC RHVLMIFIKK RIHSLPTCYL LDRWTRNATK  240
EKIDEHQNGT KILKPSVSWF NNIMMHSIGL SERATRSEKH YLFAHQRLLQ LCEELDELPY  300
EFEKDCVSGD QVSAPNIESN SFEHSQNFTL LDPPRAINKG RPRSLRMKGS LESTRKTIKG  360
SSLKQKGQSR STKLKNKETR LNSNAEAEQR STVTPVNEAR AMSQQYAESY QGYVENTGYT  420
YPSSFM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7ETW6	4e-79	A0A3Q7ETW6_SOLLC; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-80	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-29	FAR1-related sequence 5