PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01850g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | CO-like | ||||||||
Protein Properties | Length: 336aa MW: 36655.3 Da PI: 6.8906 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.6 | 2.5e-08 | 60 | 105 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H+++p+ Peinf101Scf01850g00016.1 60 VWMCEVCEQAAASVTCKADAAALCVTCDRDIHSAnplakrHERIPV 105 689*******9*********************66888888998885 PP | |||||||
2 | CCT | 70.1 | 5.6e-24 | 262 | 305 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Peinf101Scf01850g00016.1 262 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 305 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.072 | 19 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-4 | 19 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.78E-6 | 23 | 62 | No hit | No description |
PROSITE profile | PS50119 | 10.836 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-6 | 60 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.39E-7 | 61 | 105 | No hit | No description |
SMART | SM00336 | 1.3E-9 | 63 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.1E-18 | 262 | 304 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.638 | 262 | 304 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGILRDGSNC FPGGWGAAAV AKLCECCRST AALVFCRTDN LFMCLGCDTR VHGGTRHERV 60 WMCEVCEQAA ASVTCKADAA ALCVTCDRDI HSANPLAKRH ERIPVVPFYD AVESVVKSTA 120 ATLLVSINNS NAMSTTTTAT TATIPNCGGT IFDTSKVTTC LGHHEEAYMT DPWISSNTVA 180 SKLPVDFLFS ESDNILDFDY PVSVDTHPQP HYNSANDSVV PVQNVGVVPD GSSISEISYP 240 YGRSVELGNS TSQGEKLIGM DREARVLRYR EKKKNRKFEK TIRYASRKAY AETRPRIKGR 300 FAKRTDGAGV DSDIDQIFSG NDFMAPDSRY GVVPTF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608073.1 | 1e-180 | PREDICTED: zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A1J6JVW2 | 1e-166 | A0A1J6JVW2_NICAT; Zinc finger protein constans-like 5 | ||||
STRING | XP_009608073.1 | 1e-179 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 6e-85 | CONSTANS-like 5 |