PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01556g05010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 524aa MW: 59063.1 Da PI: 4.495 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 262 | 309 | 3 | 47 |
SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+el+ ++v + lG++ W+ a +++ Rt+k+++s+++++ Peinf101Scf01556g05010.1 262 KWSEEEEELFHEVVfsnpASLGKNFWNHLAIEFP-SRTRKELVSYYFNV 309 8*************4444455666**********.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.1E-5 | 259 | 312 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.69E-5 | 259 | 310 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-5 | 259 | 321 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-7 | 262 | 309 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.202 | 262 | 310 | IPR017877 | Myb-like domain |
CDD | cd00167 | 9.56E-4 | 262 | 310 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MAQKRPFGEE ELYEVSSKQP RHAEPSCQLV SVLECSRESV APKAYASGGD EENFSRIKPD 60 ADNKPDSHNV AKAYFPFEKE TEMDIHGSAS NSSWPTSSTS EEDIRSEAPF HVLVSPEYYC 120 FDHSFRTVAH PREIYSSLLS DPRKMVPIGP DFQADLPEWG AYGNMNKANL DGVHKTLSLS 180 SQADENKLAG TCIVPMPKME LVADHGKNIG AGRAECSCED VGSIRCVRLH IMEARERLNL 240 ALGEETFVRL GFYEMGELIA EKWSEEEEEL FHEVVFSNPA SLGKNFWNHL AIEFPSRTRK 300 ELVSYYFNVF MLRKRSKQNR FDPLNIDSDD DEWQEIVDSA DERAKTTDED EDSVIESPAY 360 HNNLGYNGVY EEHDKQMCYE DASAATWDDC MPVNFSSRKI FTDVPESCLS KFFDRNNSYK 420 HSMQPQDQGV PDEVAEQEVQ DSSHTTDAVR VTSESSLGKT DNNGKHWASD LAGMRGASEH 480 HSEWDAGYLS CAKNEVELLP TRTMIEEVFG DGAWIYKRGG PGLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240434.1 | 0.0 | PREDICTED: uncharacterized protein LOC109220416 | ||||
Refseq | XP_019240435.1 | 0.0 | PREDICTED: uncharacterized protein LOC109220416 | ||||
TrEMBL | A0A1J6KM24 | 0.0 | A0A1J6KM24_NICAT; At-rich interactive domain-containing protein 2 | ||||
STRING | XP_009623741.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1514 | 16 | 25 |