PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01544g01011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 359aa    MW: 41684.8 Da    PI: 4.7957
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01544g01011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132.1e-35421342103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+ye+++d+++++++sws  +nsf+v+d+++fa k+Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+ + F
  Peinf101Scf01544g01011.1  42 FLTKTYELVDDSSTNDVVSWSGGNNSFIVWDPQNFAMKLLPRYFKHSNFSSFVRQLNTYGFRKVNPDH---------WEFATEGF 117
                               9********************999******************************************99.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+k+ll++i+r+k++
  Peinf101Scf01544g01011.1 118 LRGQKHLLKTIRRRKTS 134
                               **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3738131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5738131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.74E-3538131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3042131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDHFVSIKEE FFGSSSSFLD ESTFMSMPQP MEGLNETGPP PFLTKTYELV DDSSTNDVVS  60
WSGGNNSFIV WDPQNFAMKL LPRYFKHSNF SSFVRQLNTY GFRKVNPDHW EFATEGFLRG  120
QKHLLKTIRR RKTSHNHPNK PSSNQGKETA CVELGKFGSL DEEIDLLRRD KQVLMMELVK  180
LRQHQQTTIS QLKAMEQKLE GTEMKQQQMM TFLAKAIQNP NIVEQIMQQK DKRKGLEEEI  240
KKKRRRPIDQ GSSDVETFNI KLEPQDYCDN LSGFDDLELE RLAMSMQGPS VSTTNLEEDY  300
VEKQHIMEKI EGGDKGKAID EGFWEDMLNE NSHVEHEMNL LYSEEEDEAN VDVLSEQWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-243713412123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231245KRKGLEEEIKKKRRR
2240245KKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486569.11e-161PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ9LUH81e-121HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S4BCF01e-159A0A1S4BCF0_TOBAC; heat stress transcription factor A-6b-like isoform X1
STRINGXP_009628776.11e-158(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-124heat shock transcription factor A6B