PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01271g05019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 32320.7 Da PI: 6.9361 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.1e-13 | 74 | 120 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f++L llP++ +K +K++i+ +Av+YIk L+ Peinf101Scf01271g05019.1 74 HILTERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLE 120 7789*********************6....39****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.272 | 69 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-16 | 71 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-15 | 73 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.68E-14 | 74 | 124 | No hit | No description |
Pfam | PF00010 | 1.9E-10 | 74 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-10 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MNEGSEHGCV IWDNQGWLIT NSDNLGGTIE KSVAAAKKRK AAAGGKTTKD GSNGSGEEKC 60 GGEGVEGESD HEIHILTERE RRKKMRNMFS NLHALLPQLP PKADKSTIVD EAVNYIKTLE 120 NTLQKLQKQK LERLHGMAAA TINYDPSIIA SQKLLGSDMC SFEAFLADQG STSNSAAITP 180 TNKTAPSPIL IPGLIPAVFQ TWTSPNVILN VCGEEAQISI CCLKKHGLLS SIFYVLEKYK 240 IEMVSAQVSS DHYRSMFMIQ THASGGGGSS DKYSETFTVE EMYKRAAGEI MLWATSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237586 | 2e-34 | AC237586.1 Populus trichocarpa clone POP031-J10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627647.1 | 1e-129 | PREDICTED: transcription factor bHLH95-like | ||||
Refseq | XP_016439647.1 | 1e-129 | PREDICTED: transcription factor bHLH95-like | ||||
TrEMBL | A0A1S3XIZ4 | 1e-127 | A0A1S3XIZ4_TOBAC; transcription factor bHLH95-like | ||||
STRING | XP_009627647.1 | 1e-128 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-42 | bHLH family protein |