PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01245g02008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 343aa    MW: 37356.3 Da    PI: 7.4206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01245g02008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-091443130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                              +g+WT+eEd++l+++++ +G g+W++ ++ 
  Peinf101Scf01245g02008.1 14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKS 43
                              79***********************98875 PP
2Myb_DNA-binding28.14.7e-091421672147
                               TT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  21 ggtWktIartmgkgRtlkqcksrwqky 47 
                               gg+W+ Ia +++ gRt++++k++w+++
  Peinf101Scf01245g02008.1 142 GGQWSVIAGRLP-GRTDNEIKNYWNTH 167
                               456*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-12543IPR009057Homeodomain-like
PROSITE profilePS512948.745965IPR017930Myb domain
SuperFamilySSF466895.61E-7945IPR009057Homeodomain-like
SMARTSM007172.2E-1313170IPR001005SANT/Myb domain
PfamPF002491.4E-71443IPR001005SANT/Myb domain
CDDcd001673.68E-51642No hitNo description
PROSITE profilePS512947.37124172IPR017930Myb domain
SuperFamilySSF466891.94E-9130181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-13131184IPR009057Homeodomain-like
CDDcd001679.06E-6140168No hitNo description
PfamPF002491.3E-6142167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR AHGEGCWRSL PKSADSSNNE TKCSSVTTEE  60
TQPLELPKKN TQVMINLELS IGLPFHAKTD HIYSSNSAES TAPYNFLAAV APPPAVAAVP  120
VMAMAELVAE TACLCWQIGF QGGQWSVIAG RLPGRTDNEI KNYWNTHIKR KLISHGIDPQ  180
THRPLNAAAN PVATTTTTTN TTKNICMDFR NNVDQKPHIN IINKSNATDS SNNETKCSSV  240
TTEETQPLEL PKKNTQVMIN LELSIGLPFH AKTDHIYSSN SAESTAPYNF LAAVAPPPAV  300
AAVPVMAMAE LVAETACLCW QIGFQGGQSC GKCKTTTGFY RFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-50HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241841.14e-91myb-related protein 330
TrEMBLA0A2G3C8484e-93A0A2G3C848_CAPCH; Myb-related protein
STRINGSolyc06g065100.2.12e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-25myb domain protein 6