PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01171g02036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | YABBY | ||||||||
Protein Properties | Length: 181aa MW: 20318.3 Da PI: 7.9489 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 197.8 | 4.5e-61 | 6 | 165 | 2 | 165 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 ++f+ + +CyvqC++C+til+vsvP +sl k+vtvrCGhCtsllsvnl+kas + hl sl+e+ + + +v++e++ n Peinf101Scf01171g02036.1 6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTSLLSVNLMKASLV---PLHLFASLNETEHPKPEVDKEETGAN 87 678999***********************97369****************999854...23444444444444555555555554 PP YABBY 86 vekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++k+ +++ + s++e++++ +v p v++PPekrqr+Psayn+fik+ei+r+k+ P+++h++afs+aaknWahfP+ Peinf101Scf01171g02036.1 88 NKKSADSKSP--F-MTSSDEEDQLENVLPvVNKPPEKRQRAPSAYNCFIKDEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 165 4443333322..2.22444444444444449*************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-59 | 11 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.24E-8 | 112 | 168 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 117 | 168 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSTLDHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTSL LSVNLMKASL 60 VPLHLFASLN ETEHPKPEVD KEETGANNKK SADSKSPFMT SSDEEDQLEN VLPVVNKPPE 120 KRQRAPSAYN CFIKDEIKRL KTIYPNMTHK QAFSTAAKNW AHFPPSQQRE SCSLGDRKMP 180 K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621066.1 | 1e-111 | PREDICTED: axial regulator YABBY 4 isoform X1 | ||||
Refseq | XP_016511953.1 | 1e-111 | PREDICTED: axial regulator YABBY 4-like isoform X1 | ||||
Refseq | XP_019228973.1 | 1e-111 | PREDICTED: axial regulator YABBY 4 isoform X3 | ||||
Swissprot | Q9LDT3 | 7e-62 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A1S4DF36 | 1e-110 | A0A1S4DF36_TOBAC; axial regulator YABBY 4-like isoform X1 | ||||
STRING | XP_009621066.1 | 1e-110 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 3e-64 | YABBY family protein |
Publications ? help Back to Top | |||
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