PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01129g02006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 326aa    MW: 36716.5 Da    PI: 4.3206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01129g02006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11160203654
                               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Peinf101Scf01129g02006.1 160 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 203
                               589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-15157222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9160203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15161215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-5161207No hitNo description
CDDcd048731.42E-4252293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEYYSTDNGF LEELLALRSD SWDTSIPMEM TDIYHNVFVE NSVDVPLPSS ITTITTTASN  60
SFEDYSYFPF DQSLNCSFYS PSLTDNTSSF PSQEDFSSIL DDEVGNYSFQ NMEVGNNVPN  120
CKLEEIQVSE AGVVPGFNIG FCPEKKIKSK KLDGQPSKNL MAERRRRKRL NDRLSMLRSV  180
VPKISKMDRT SILGDTIDYM KELLEKINNL QEEMELGPDQ LSLLSIFKDV KPNEMLVRNS  240
PKFDVERRGV DTKVEICCAG KPGLLLSTVT TLEALGLEIQ QCVISCFSDF AMQASCSEEM  300
EQRGLIDSED IKQALFRNAG YGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754439e-56HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623441.10.0PREDICTED: transcription factor bHLH93-like
RefseqXP_016490472.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL17e-87BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1S4BNM40.0A0A1S4BNM4_TOBAC; transcription factor bHLH93-like
STRINGXP_009623441.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.17e-89beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]