PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01118g07005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 262aa MW: 30694.2 Da PI: 5.1563

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01118g07005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7.3e-27	87	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + ++tr gC a+l+v +++ kw+vtk+++eH Peinf101Scf01118g07005.1 87 DFYMAYGRRTGFTVRIHHNRRSRINNIVIGQDFVCSKEGFREKKYIHRKDRVLPPPVTREGCLAMLRVALRDGTKWVVTKFVEEH 171 6*****************************************999889999**************************** PP FAR1 86 nHela 90 nH+l+ Peinf101Scf01118g07005.1 172 NHALM 176 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-23	87	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGFYMSEVFM ESPSSHAFDV DERKDFLPFD SNDDHGYLDE ELTAGMDMYV AEDDKYLGQS 60 NEDQSSSENA IEPQIGMEFN SRDDARDFYM AYGRRTGFTV RIHHNRRSRI NNIVIGQDFV 120 CSKEGFREKK YIHRKDRVLP PPVTREGCLA MLRVALRDGT KWVVTKFVEE HNHALMSPSK 180 VPWRGSAKNS VSQDEKDQRI RDLTLELYNE RQRCKRRCAA YQEQLQTLLK FIEDQTDQLS 240 RSVEQAVQRV KELENERLED SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	215	RQRCKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016450611.1	1e-164	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016450612.1	1e-164	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016450613.1	1e-164	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A1S3YF26	1e-163	A0A1S3YF26_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like
STRING	XP_009779431.1	1e-163	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14445	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-37	FAR1 family protein