PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01044g05033.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 267aa MW: 28842.7 Da PI: 8.4821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01044g05033.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.7e-06	223	249	6	36
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS CS HLH 6 nerErrRRdriNsafeeLrellPk.askapsk 36 +++Er RR ri ++ +L++l+P+ + k Peinf101Scf01044g05033.1 223 SIAERERRTRISGKLKKLQDLVPNmD-----K 249 689********************955.....3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.788	217	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-6	220	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.63E-4	221	253	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.7E-6	222	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MYPSSTSSSS QGSMSHSTST TGGGGGGLTR YGSAPGSFLT TAVEAVISAN NHEFSTHGSH 60 NHHPHLGPSR YYAESTSYSV SMGRGSYNSK GVADGSRGIT RLNSQLSFTR QEALSQIAEE 120 NEDIEGTSTD NGHRKSAHSY ATASNFAMGS WEDNNSIMFS VTPSKRAKHD IVNGLDDGET 180 QFQFGLSQTA LELASMDRLL NIPEDSVPCK IRAKRGCATH PRSIAERERR TRISGKLKKL 240 QDLVPNMDKN LNKELENCKC GCKKSSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU530153	7e-96	KU530153.1 Solanum demissum R8 gene cluster, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016477044.1	1e-126	PREDICTED: transcription factor bHLH128-like isoform X1
Swissprot	Q8H102	6e-48	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A1S4AKA5	1e-125	A0A1S4AKA5_TOBAC; transcription factor bHLH128-like isoform X1
STRING	XP_009620076.1	1e-126	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6455	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	6e-50	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]