PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00979g02022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family G2-like
Protein Properties Length: 395aa    MW: 44659.6 Da    PI: 9.8676
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00979g02022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.6e-32207260255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               pr+rWt+ LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Peinf101Scf00979g02022.1 207 PRMRWTSSLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 260
                               9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15203260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-28205260IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23207260IPR006447Myb domain, plants
PfamPF002494.3E-7208259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSAWKRTNS TTDNEMNLLF WRRALESKNS ISKVPDNSTS  60
LFELSLSNPK PSPEPNSVHF HHLQNNHMNI IHSLYQNHLT NHYHQQQNQG LNSELSFLKP  120
IRGIPVYHQN PPTPTSPFPF TQQTFDNTTT AATLPLRSSA SYINSNNKTI SSTTMPFQSQ  180
QHHNHQAGIM RSRFLSRFPT KRTIRAPRMR WTSSLHARFI HAVELLGGHE RATPKSVLEL  240
MDVKDLTLAH VKSHLQMYRT VKTTDRAAGP ASSGQSEVFD NGSSGDNTSE DLMPDTENSR  300
KTELSNQQDR QRIHLPGKDY NGLWRNSSSR ESWQLHDKPG DYPGNIPSLE KKQHKDMEAN  360
CSSYDRVSAE VSSSSITKTS PKNPNLEFTL GRSSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16208262458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16208262458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16208262458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16208262458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16208262458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16208262458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16208262458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16208262458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615774.10.0PREDICTED: probable transcription factor KAN2 isoform X3
RefseqXP_016459616.10.0PREDICTED: probable transcription factor KAN2 isoform X3
SwissprotQ9C6165e-90KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A1S3Z5E60.0A0A1S3Z5E6_TOBAC; probable transcription factor KAN2 isoform X3
STRINGXP_009615772.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.19e-93G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]