PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00961g04004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 263aa    MW: 30243.4 Da    PI: 6.7957
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00961g04004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36121042103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F++k+y++++d++++ li+w + +nsf+v+d+ +f++k+Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F
  Peinf101Scf00961g04004.1  12 FVMKTYQMVNDPKIDGLITWGSANNSFIVVDPLDFSQKLLPTYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWF 87 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+++ll++i rkk++
  Peinf101Scf00961g04004.1  88 LRGQTHLLKNIVRKKHS 104
                               **************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-518101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-339101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.5E-389101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.9E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEANNSNIVA PFVMKTYQMV NDPKIDGLIT WGSANNSFIV VDPLDFSQKL LPTYFKHNNF  60
SSFVRQLNTY GFRKVDPDKW EFANEWFLRG QTHLLKNIVR KKHSRNNSYF HKHEEDEEEG  120
MFTEIDRLKQ EQKLLEQQLE NMTRRLETTE KRPHQMMAFL CKVVEDPEIL PRIMLEKENK  180
SKKLTFENGE KKRKLIMMTE PCNANTCPAT SSSLSSGSSE SGGFTMAPLL DNFSRYDYGG  240
AGIVATEEAS PPPYPFSMLG GGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-25310121129Heat shock factor protein 1
5d5v_B5e-25310121129Heat shock factor protein 1
5d5v_D5e-25310121129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770587.11e-114PREDICTED: heat stress transcription factor C-1
RefseqXP_016479969.11e-114PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV523e-85HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1S4ATG31e-113A0A1S4ATG3_TOBAC; heat stress transcription factor C-1-like
TrEMBLA0A1U7VRR71e-113A0A1U7VRR7_NICSY; heat stress transcription factor C-1
STRINGXP_009770587.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-80heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]