PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00896g02007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 190aa MW: 22200.7 Da PI: 5.9184 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 31 | 85 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++eq++ Le++Fe++ ++ +++ ++Ak+lgL+ rqV +WF N+Ra++k Peinf101Scf00896g02007.1 31 KNKNRFSDEQIKSLETMFESKTKLEPRKKLQIAKELGLEPRQVAIWFLNKRARYK 85 56789*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 10 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-18 | 13 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-13 | 29 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.95E-12 | 31 | 88 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 31 | 85 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.1E-11 | 87 | 121 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MFDGGEYFSS SAECFSVSSF SSSSSRKRKI KNKNRFSDEQ IKSLETMFES KTKLEPRKKL 60 QIAKELGLEP RQVAIWFLNK RARYKSKQLE KDYNILVSNY KNLSSQYESL KKEKQSLVMQ 120 SQKNEQCCKQ EFGEIDIDSR SDNRDNKNQM NEKSLSFDLS DHEIGEISDD DSSIKTDYFG 180 VDEDHDFLNM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019226444.1 | 4e-62 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 5e-46 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A314KRV9 | 1e-60 | A0A314KRV9_NICAT; Homeobox-leucine zipper protein athb-7 | ||||
STRING | Gorai.007G111400.1 | 4e-60 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 4e-46 | homeobox 7 |
Publications ? help Back to Top | |||
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