PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00889g03041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | WRKY | ||||||||
Protein Properties | Length: 159aa MW: 18148.2 Da PI: 9.5071 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35 | 2.8e-11 | 98 | 119 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk+++fpr Peinf101Scf00889g03041.1 98 LDDGYRWRKYGQKAVKNNRFPR 119 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-12 | 83 | 119 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-14 | 90 | 139 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.517 | 93 | 140 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-12 | 98 | 139 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-7 | 99 | 119 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MENYSHIFPS SSSHNNSHAK SELGQEDKKV PNGFLGLMAS MEQTPSSDMN SGVTQSNNNS 60 FSNYSMEQNE VKSCKKKGEK KIKKPRYAFQ TRSQVDILDD GYRWRKYGQK AVKNNRFPRL 120 SKDEGVVVTT YEGMHSHPIE KSTDNFEHIL SQMQIYASV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-14 | 88 | 137 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-14 | 88 | 137 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 4e-50 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 4e-50 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615508.1 | 2e-67 | PREDICTED: probable WRKY transcription factor 75 | ||||
Refseq | XP_016446514.1 | 2e-67 | PREDICTED: probable WRKY transcription factor 75 | ||||
TrEMBL | A0A1S3Y303 | 5e-66 | A0A1S3Y303_TOBAC; probable WRKY transcription factor 75 | ||||
STRING | XP_009615508.1 | 8e-67 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2204 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 1e-41 | WRKY DNA-binding protein 75 |