PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00837g12020.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 562aa    MW: 62207.8 Da    PI: 7.1108
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00837g12020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.7e-11249305155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Peinf101Scf00837g12020.1 249 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 305
                               57*******************4444.2344336655.779999**************98 PP
2AP226.81.3e-08348382138
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                               s y+GV++++++grW A+I  +     +k  +lg+fg 
  Peinf101Scf00837g12020.1 348 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGK 382
                               57****************988532...5*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.69E-15249314IPR016177DNA-binding domain
PfamPF008476.7E-9249305IPR001471AP2/ERF domain
CDDcd000188.06E-20249315No hitNo description
PROSITE profilePS5103217.649250313IPR001471AP2/ERF domain
SMARTSM003801.2E-22250319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12250314IPR001471AP2/ERF domain
PRINTSPR003671.3E-5251262IPR001471AP2/ERF domain
PRINTSPR003671.3E-5295315IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-5348382IPR016177DNA-binding domain
CDDcd000186.76E-12348438No hitNo description
SMARTSM003803.8E-19349444IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-4349381IPR001471AP2/ERF domain
PROSITE profilePS5103213.999349438IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-5412439IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-6412438IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAPADNHNWL SFSLSSMEML SSSSSHHQSS MLHQPNNMKL APTSFDGSSS ADSHHYYFAD  60
NFFHHGWSNP KNQQVMYTEG DQKEVIGLNN VCTNGDSLIF QNYLDSQIHQ QPPPKLEDFF  120
AESSSLTHDD SSLTTQIYNF NDHQDLKSIA GFQAFSTNSG SEVDDSGSVG KTLTAYNTSG  180
ESCNELASYS QCCVPPPPTT GTLSLSVNVN QQQQQSLLEE KEKAIVVAAV PVDSESCKKI  240
SDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQGGYDKEE KAARAYDLAA  300
LKYWGPTATT NFPVTNYAKE LEEMKHMTKQ EFIASLRRKS SGFSRGASIY RGVTRHHQQG  360
RWQARIGRVA GNKDLYLGTF GKINFLNSTW STISKNSSCF LYNRNHIKLS TATEEEAAEA  420
YDIAAIKFRG VNAVTNFEMN RYDVEAIMKS ALPVGGTAKR LKLSLESEQK SLLSNNQQTT  480
QSSSSNNNSN SINFGAMPPV SAIPCGVPFD TNPALYHHNF FHHLYSGNAG ASDTSGAATT  540
MAAAMPLLPS AAELFIWPHQ SY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253659.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-162AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J6IEH40.0A0A1J6IEH4_NICAT; Ap2-like ethylene-responsive transcription factor ail6
STRINGXP_009615436.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-119AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]