PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00640g02025.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 403aa    MW: 45336.7 Da    PI: 5.4327
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00640g02025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.41.4e-83434021345
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.. 83 
                               l++lLl+cA a++++d +laq++++ l++ as+ gdp+qRl++ f++AL +r +r +++ ++    s+ +     + +++++l  
  Peinf101Scf00640g02025.1  43 LEKLLLHCASALENNDVTLAQQVMWVLNNVASSMGDPNQRLTSWFLRALISRASRVCPTAMNFHGGSNIE----RRLMSVTELag 123
                               5799***************************************************777777655554444....33333344456 PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerL 165
                               ++++ P+++f++ + N+aI++a++g ++vHi+Df+i++++QWp+L++aLa+Rpegpp+lRi + +   ++    + ++ee+g+rL
  Peinf101Scf00640g02025.1 124 YVDLIPWHRFGFCASNSAIYKAIKGRSMVHILDFSITHCMQWPTLIDALAKRPEGPPTLRISVPSWRPQVpplLNVSIEEVGQRL 208
                               **************************************************************98875555889999********* PP

                      GRAS 166 akfAeelgvpfefnvl...........vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvksls 235
                               ++fA+  +vpfef+v+           + +  l++l  ++L++k +E+l+Vn++  l +l++e+   ++   +rd +L+ +k+l+
  Peinf101Scf00640g02025.1 209 TNFAKFRDVPFEFQVIenllpessstfHYDiLLSQLCSSSLQCKDDEVLVVNCQNWLRYLPNEQNGNPHdlsCRDIFLDKIKELN 293
                               ***************99999987776544446677788999********************999888777779************ PP

                      GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                               P +++vv++++d++++s+  r++ +++y +  fd+le+ lp++s +r  +E+  +g++i+n++a eg++r+er e+  +  +r++
  Peinf101Scf00640g02025.1 294 PCILTVVDEDSDLGTSSLTSRITTCFNYLWIHFDALETFLPKDSGQRLDYEAD-IGQKIENLIAFEGNQRIERLESGINFTQRMK 377
                               *****************************************************.******************************* PP

                      GRAS 321 eaGFkpvplsekaakqaklllrkvk 345
                               ++GF ++p+ e+++ ++k+ll +++
  Peinf101Scf00640g02025.1 378 NCGFLSIPFCEETTREVKSLLDEHA 402
                               *********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.50117403IPR005202Transcription factor GRAS
PfamPF035145.0E-8143402IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MKTELRGNST TISLQNPTLF NNPQSSLAGA LKGCIGSLDG ACLEKLLLHC ASALENNDVT  60
LAQQVMWVLN NVASSMGDPN QRLTSWFLRA LISRASRVCP TAMNFHGGSN IERRLMSVTE  120
LAGYVDLIPW HRFGFCASNS AIYKAIKGRS MVHILDFSIT HCMQWPTLID ALAKRPEGPP  180
TLRISVPSWR PQVPPLLNVS IEEVGQRLTN FAKFRDVPFE FQVIENLLPE SSSTFHYDIL  240
LSQLCSSSLQ CKDDEVLVVN CQNWLRYLPN EQNGNPHDLS CRDIFLDKIK ELNPCILTVV  300
DEDSDLGTSS LTSRITTCFN YLWIHFDALE TFLPKDSGQR LDYEADIGQK IENLIAFEGN  360
QRIERLESGI NFTQRMKNCG FLSIPFCEET TREVKSLLDE HAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-521640165441Protein SHORT-ROOT
5b3h_B2e-521640111387Protein SHORT-ROOT
5b3h_E2e-521640111387Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631267.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A2G3BZT30.0A0A2G3BZT3_CAPCH; Uncharacterized protein
STRINGXP_009631267.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-104GRAS family protein