PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00590g21026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 30103.4 Da PI: 9.3643 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.6 | 4.7e-09 | 12 | 75 | 9 | 73 |
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 ++G svr+++ +k+k +g +t+r+f+ +keg+r +++++ + +++r+et+tgC ++ ++++++ Peinf101Scf00590g21026.1 12 SIGVSVRREYANKNKVQGCVTSRKFKYYKEGFRGKDNRD-PTVQKHRKETKTGCLTHIIISRHSN 75 5799********************************999.889999**************99864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-6 | 12 | 75 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.9E-12 | 187 | 260 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGNREWKNEI TSIGVSVRRE YANKNKVQGC VTSRKFKYYK EGFRGKDNRD PTVQKHRKET 60 KTGCLTHIII SRHSNRIGTY SSSCSSIFGI LLPSQRKIKR AQAYQIDILD DSEICPKASF 120 DYVARQAGGQ SVLDYTKEDH KNYLRDKQKN SLKHGVACSF VEYFEKKTQE DPTFYFSLHL 180 DEDKYRSLAL FVGLYNHRKM VTFGATLLYG ESIELLAWLF NDFFRIMAAD KPQTFITDQD 240 FAIFAAVSLV MLQTYHCLCI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016463957.1 | 1e-98 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S3ZI80 | 3e-97 | A0A1S3ZI80_TOBAC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009619707.1 | 3e-99 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-20 | FAR1-related sequence 5 |