PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00570g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | FAR1 | ||||||||
Protein Properties | Length: 241aa MW: 27582.1 Da PI: 9.4024 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.6 | 1.1e-09 | 76 | 125 | 39 | 90 |
FAR1 39 gkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 g++ ++ ++++r+r e r+gC a+++ k + +g wev ++ eHnH++ Peinf101Scf00570g00009.1 76 GQSPLYSNY-QERKRQRLEYRCGCLARIRFKIS-NGMWEVFEFCDEHNHPMI 125 333333333.78999****************99.***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-7 | 83 | 125 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGDSLVDNDD FDNEDNLPLV VPCLFLISGL HNDGQRSPTV QNVSDINNVF TLKIGMKFSS 60 EDESYEAYNS YVVAKGQSPL YSNYQERKRQ RLEYRCGCLA RIRFKISNGM WEVFEFCDEH 120 NHPMIEKNLR NFIQSGRKLT DSTKAANDIE SKEIARKYLY QARVEITKLQ GELYAEASHK 180 SCSKSRIYVG PSSGVNDQVL DPVKKKGKGN GYGRLKPRSE QRKKRASHKT LKARATEQQQ 240 Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 224 | KKKGKGNGYGRLKPRSEQRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_009628526.1 | 4e-45 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |