PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00557g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 472aa MW: 53405.7 Da PI: 5.6815 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.1 | 1.5e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ie+ +nrqvt+skRrngilKK +ELSvLCd++va+i+fs++g+l ys Peinf101Scf00557g01001.1 10 KIESLTNRQVTYSKRRNGILKKVYELSVLCDVDVALIMFSPSGRLTHYS 58 59********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.5E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.576 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-25 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.671 | 111 | 204 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MGRSKLPLLK IESLTNRQVT YSKRRNGILK KVYELSVLCD VDVALIMFSP SGRLTHYSRK 60 RRIEDVLSEL VSLPDSERGF FISNKESTLW NLRKIEIEDK FCDIERLNPA YLNTSDTTKK 120 IQDEINSLHC KLDEAEGLLR IFEPDTQRIT SLHELDLCEK RLQVALNQVR RRMEQLSSNQ 180 ISSYEGNMEQ INALLQYIDN TQAENTNPSL EKPHYDLWLE LEDYNYPYIP ENNSTSHLYA 240 ASETSSLSQC SMNLPSPTIY DAMSQTSGDT YRKEGSLSSL TDENFKQSQH STRTFPALTR 300 LQTSLTFAKS ELETPTSALR PVAPYLQAEA AAAAASSQQP PPSNNHDKVN TELDSVQPKI 360 TTSKYQMSQT STSGESYLAE GSFTSLTDEN FKQSQCSTRI FPAVTPLQTS FSFAKTELET 420 PTSALRPVAP FMQAEAAVSP SQQLPYTNNE EANHELAWFQ PKMKKSKYHH SA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 3e-44 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 3e-44 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016454543.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL104 isoform X1 | ||||
TrEMBL | A0A1S3YQY1 | 0.0 | A0A1S3YQY1_TOBAC; agamous-like MADS-box protein AGL104 isoform X1 | ||||
STRING | XP_009599347.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13070 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 4e-46 | AGAMOUS-like 104 |