PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 221aa MW: 24447.3 Da PI: 6.3683

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00554g01004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.1	3.1e-11	10	55	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W+ e d + +a + ++ g +W++Ia+ ++ g+tl ++k+++ Peinf101Scf00554g01004.1 10 VWSREQDIAFENALATHPEGsayRWERIAADVP-GKTLVEVKNHYEL 55 7******************************.*********75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.702	3	57	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	6	65	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.09E-10	6	64	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-8	7	59	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-8	10	54	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-8	11	57	No hit	No description
PROSITE profile	PS50090	5.541	85	138	IPR017877	Myb-like domain
SuperFamily	SSF46689	5.98E-5	87	127	IPR009057	Homeodomain-like
SMART	SM00717	50	89	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MTVAKSRSSV WSREQDIAFE NALATHPEGS AYRWERIAAD VPGKTLVEVK NHYELLLDDN 60 RKEEWDLSSL NSESNDGDKS TRADQERRKG IAWTEDEHRL FLLGLEKYGK ELLHKWPVMP 120 KNILRLNSMN KDRRRSSIHD ITSVSDGDVS VPQVPITGET IGAGAGGSSG RSNKQSTPTS 180 PLGVGMYEAT TFGQPVTGPL VSVVGTPVNL SAPNYMQYSF Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-44	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	1e-44	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016572400.1	2e-88	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_027097519.1	2e-88	transcription factor SRM1-like
Swissprot	Q9FNN6	2e-60	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2G2ZGY6	7e-89	A0A2G2ZGY6_CAPAN; Transcription factor DIVARICATA
STRING	Gorai.013G067600.1	8e-86	(Gossypium raimondii)
STRING	PGSC0003DMT400065102	6e-86	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4149	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-47	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]