PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00475g04016.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

TCP

Protein Properties

Length: 350aa MW: 39627.6 Da PI: 10.2544

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00475g04016.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.1	7.6e-39	90	242	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..........seceaes 77 +k+ r+ ki T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WL++++k ai elt+ s+++a s+c Peinf101Scf00475g04016.1 90 KKRERSCKILTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLFTNSKLAIEELTNWSTDQAhhpdiagatkSSC---- 170 7999*********************************************************777773333333322222.... PP TCP 78 ssssasnsssg.....................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 ++++ + + k +++++k++ ++++a+s+ + +esr arararert +km + Peinf101Scf00475g04016.1 171 --NETA-K--NgasptsecenlaiatneglerKPKRAKEKNEVKNHEATSHVLIGRESRDMARARARERTIKKMWSR 242 ..1111.1..1123455566777888888885445555588888888888888888***************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-35	90	240	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.928	91	149	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.693	221	238	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MFPASNSTGN PLPHPSSTFH SSSPFLGLNG NQILLHHYQD QFSTHYKNAL LRDSTANINN 60 MSLSTNSIIN RPNKSYCDSL RSFPSKKKSK KRERSCKILT SQGPRDRRVR LSIGIARKFF 120 DLQEMLGFDK PSKTLDWLFT NSKLAIEELT NWSTDQAHHP DIAGATKSSC NETAKNGASP 180 TSECENLAIA TNEGLERKPK RAKEKNEVKN HEATSHVLIG RESRDMARAR ARERTIKKMW 240 SRIETSERSA NYSQIKSNFF GKKDIREMEE QFCKNKLQAS EGPNKEIFQG SGVTKIKIKP 300 SLILGFHPNN LYAPIDSAAY YGSSSFNIEN WDTRLQGPWK PWDSVQSNII

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MFPASNSTGN PLPHPSSTFH SSSPFLGLNG NQILLHHYQD QFSTHYKNAL LRDSTANINN  60
MSLSTNSIIN RPNKSYCDSL RSFPSKKKSK KRERSCKILT SQGPRDRRVR LSIGIARKFF  120
DLQEMLGFDK PSKTLDWLFT NSKLAIEELT NWSTDQAHHP DIAGATKSSC NETAKNGASP  180
TSECENLAIA TNEGLERKPK RAKEKNEVKN HEATSHVLIG RESRDMARAR ARERTIKKMW  240
SRIETSERSA NYSQIKSNFF GKKDIREMEE QFCKNKLQAS EGPNKEIFQG SGVTKIKIKP  300
SLILGFHPNN LYAPIDSAAY YGSSSFNIEN WDTRLQGPWK PWDSVQSNII

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803760.1	1e-169	PREDICTED: transcription factor CYCLOIDEA-like
Refseq	XP_016462466.1	1e-169	PREDICTED: transcription factor CYCLOIDEA-like
TrEMBL	A0A1S3ZDU9	1e-168	A0A1S3ZDU9_TOBAC; transcription factor CYCLOIDEA-like
TrEMBL	A0A1U7YYF6	1e-168	A0A1U7YYF6_NICSY; transcription factor CYCLOIDEA-like
STRING	XP_009803760.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	4e-22	TCP family protein