PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00370g06008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

G2-like

Protein Properties

Length: 420aa MW: 47520.7 Da PI: 7.465

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00370g06008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.6e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Peinf101Scf00370g06008.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-24	183	230	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MYHQHHQVKM MHHSSRMSIP ERQLFLQSGN TSGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANANG VSKAGKKSNI 120 IFYKNKCFKI TAVENIPETT GTQMHAPIIG SQPNNCHSFS MLEPTLQFIF NFFDHNIFVF 180 RNIQISEAIQ MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL QAVLEKAQET LGRQNLGRIG 240 LEAAKVQLSE LVSKVSNQCL NSTLSEIKEI SGFHPADCSM DSCLTSCDEI HNNHIGLRPL 300 SFTPSNDIAT ETLRWCDDLK ENKSFFDHED KEKVLFSKES NYCSTLSMSI GLEGSGKWND 360 YNSSDGRLNL IATKSDSMKP EKKQNSTSSQ EYKLDLNTDD ETIDAATSNK QFDLNGFSWN

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MYHQHHQVKM MHHSSRMSIP ERQLFLQSGN TSGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANANG VSKAGKKSNI  120
IFYKNKCFKI TAVENIPETT GTQMHAPIIG SQPNNCHSFS MLEPTLQFIF NFFDHNIFVF  180
RNIQISEAIQ MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL QAVLEKAQET LGRQNLGRIG  240
LEAAKVQLSE LVSKVSNQCL NSTLSEIKEI SGFHPADCSM DSCLTSCDEI HNNHIGLRPL  300
SFTPSNDIAT ETLRWCDDLK ENKSFFDHED KEKVLFSKES NYCSTLSMSI GLEGSGKWND  360
YNSSDGRLNL IATKSDSMKP EKKQNSTSSQ EYKLDLNTDD ETIDAATSNK QFDLNGFSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770704.1	1e-176	PREDICTED: uncharacterized protein LOC104221350 isoform X1
Refseq	XP_016516111.1	1e-176	PREDICTED: uncharacterized protein LOC107832752 isoform X1
Swissprot	Q9SQQ9	1e-114	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1S4DRQ0	1e-175	A0A1S4DRQ0_TOBAC; uncharacterized protein LOC107832752 isoform X1
TrEMBL	A0A1U7W7S3	1e-175	A0A1U7W7S3_NICSY; uncharacterized protein LOC104221350 isoform X1
STRING	XP_009770704.1	1e-176	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-116	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]