PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00300g10012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 251aa MW: 28906.9 Da PI: 7.5937 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 30.7 | 6.9e-10 | 150 | 235 | 14 | 99 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlr.swlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ++ ++P ri++i+k+++ +++s ea ++ ka e f+ e+ r ++ a + + + ++++v++ + fdfl d vp Peinf101Scf00300g10012.1 150 SESSLYQFPHNRIHRIIKSENADSKMSQEAIFMVNKATEKFL-EVFCReAYACAFLDRNHYVGYDHLSSVVSKRHRFDFLSDFVP 233 44556799********************************96.66666166666666667788899******************* PP NF-YC 98 rd 99 r+ Peinf101Scf00300g10012.1 234 RK 235 97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.38E-16 | 148 | 235 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-10 | 156 | 219 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-19 | 157 | 234 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MPKESENLVV PSSSNEECVS DSDEETNNNN NNSANRKEDL VYSRKGNREN ESLKTYIRKQ 60 KIKNEEEKTH NGSQGPNKKK RQVEKVGKKA KKTAEEKAPK KARANNKQGD EEGEEKLVKK 120 MPKSNGEEKK SNAKQKREDG EEEEDEDDKS ESSLYQFPHN RIHRIIKSEN ADSKMSQEAI 180 FMVNKATEKF LEVFCREAYA CAFLDRNHYV GYDHLSSVVS KRHRFDFLSD FVPRKVRAED 240 ALAEISKAEE T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800538.1 | 2e-60 | PREDICTED: DNA ligase 1-like | ||||
Refseq | XP_016513155.1 | 2e-60 | PREDICTED: DNA ligase 1-like isoform X1 | ||||
TrEMBL | A0A1S4DIC9 | 5e-59 | A0A1S4DIC9_TOBAC; DNA ligase 1-like isoform X1 | ||||
TrEMBL | A0A1U7YBN9 | 5e-59 | A0A1U7YBN9_NICSY; DNA ligase 1-like | ||||
STRING | XP_009800538.1 | 8e-60 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9304 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 4e-27 | nuclear factor Y, subunit C10 |