PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00258g12012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 482aa    MW: 55624.1 Da    PI: 9.5291
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00258g12012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.64.8e-1454136190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               kfY +Y ++ GFsvrk++ ++s+++++i++++fv ske +r++++ +   ++++r et  +Ck ++ ++k+++   +++     H
  Peinf101Scf00258g12012.1  54 KFYLNYVHRSGFSVRKNRISRSRKDKSIISQEFVYSKERFRSKKSLE---SSQQRDETGEDCKVMIYLSKKEERCGRIS----CH 131
                               6*****************************************99877...9999*****************77777765....69 PP

                      FAR1  86 nHela 90 
                               nHela
  Peinf101Scf00258g12012.1 132 NHELA 136
                               99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1154136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
DKLANSNLPN QDIEGVGDSL EEFEGDIVID ILGDEEPRAP YIGMEFQSLD TAFKFYLNYV  60
HRSGFSVRKN RISRSRKDKS IISQEFVYSK ERFRSKKSLE SSQQRDETGE DCKVMIYLSK  120
KEERCGRISC HNHELASPHS QKFMRSKSKK SEAQKNLIDL LDISGVRPTQ YDKAVDARYD  180
KVREKDFKTK DSKAKLKTLY PMEDEAAKAY PRKIFKIFQE ELTMSQKFVK DGMRIYKVHE  240
FQQQKLEYIV RLNLELKNNA CSDGIYKVPP CYLLDRWTIF ATKKKFVEVS HEQHNLKPST  300
VWFNNIMVHS LGISERATRS RKHYKFAYQK LLQLSKELDE LPYEFEDVNV CDGQVNESNV  360
ELNLGEQSQN VTLLDPLRAA TKGRPRSLRM KVLGRPKEIL LKNKRAKPEA QRSAREQVCS  420
SSSKAEVESR STETPLRAAP TMSYSGSQGQ NDNGSGYPTS FTVGLLVPDL MRASSYPYRQ  480
DF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389096e-73AC238909.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-131f15 map 1, complete sequence.
GenBankAC2457266e-73AC245726.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-44p6 map 10, complete sequence.
GenBankAC2461566e-73AC246156.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-18l8 map 1, complete sequence.
GenBankAC2462116e-73AC246211.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-41e4 map 1, complete sequence.
GenBankHG9755136e-73HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883762.11e-106protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025886302.11e-104protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G3CXF41e-112A0A2G3CXF4_CAPCH; Uncharacterized protein
STRINGSolyc01g110070.1.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-11FAR1-related sequence 5