PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00244g06007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 679aa MW: 73879.3 Da PI: 7.1591 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4e-07 | 247 | 267 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd+C +aHg Peinf101Scf00244g06007.1 247 PCPEFKK-GACAKGDSCEYAHG 267 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12796 | 1.3E-9 | 51 | 122 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.51E-15 | 54 | 136 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.763 | 55 | 79 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.68 | 55 | 130 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 7.4E-4 | 55 | 85 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 2.3E-16 | 55 | 153 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 9.03E-15 | 57 | 137 | No hit | No description |
PROSITE profile | PS50088 | 12.155 | 90 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4.3E-4 | 90 | 122 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 239 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.019 | 242 | 269 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 242 | 268 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 247 | 267 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 274 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.582 | 277 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 277 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MDRKDRASNS CSKLLELSAS DDLAGFICEV EKGCGIDELS FWYGRRIGSK KMVYEERTPL 60 MIASMYGSTE VLKYIVESGK VDVNRACGFD GATALHCAAA GGSESSIEVV KILIGASADV 120 NVCDASGNKP CDVIASYPKS LRNSKRKSLE LLLKGSLAEL AEEEEEEGIA AIQTMKEGSE 180 KKEYPIDTSL PDINDGIYGS DDFRMFCFKV KPCSRAYSHD WTECPFVHPG ENARRRDPRK 240 YNYTCVPCPE FKKGACAKGD SCEYAHGVFE SWLHPAQYRT RLCKDETGCP RKVCFFAHKP 300 EELRPLYAST GSAIPSPKAT PVSSMDMGTL SPLALGSSSM MLPATSTPPM SPAATCSSPM 360 GGNMWQGKVN PTPPALQLSG SRLKTSLNAR DLDLNMEMLG LQSIRTQQQL RQQLIDEMAG 420 LSSPSYWNKD NRIGDMKPTN LDDVFGSMDS PLLSQLQGLS PRVTSTTSSQ LYSPTVSHLQ 480 GLSPRVTNNT SQLQSPTGLQ MRQNMNQLQA SYSNMNQSSP LRNPSAYGFD SSAAVAAAVM 540 NSRSAAFAKR SQSFIDRSGM GHRAGPNGVA NSPPLMSSNM SDWGSPNGKL EWGFNSEDTN 600 KLKRSQSFGF RGGNGAPTRS PIAPSQIHEP DVSWVNSLVK DVSSTGTGLY SSEQKRGGVH 660 DAIPPWMEQM YIDQERIVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM507320 | 0.0 | KM507320.1 Petunia x hybrida CCCH-type zinc-finger protein (TZF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015076207.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A0X8ZWW6 | 0.0 | A0A0X8ZWW6_PETHY; CCCH-type zinc-finger protein | ||||
STRING | PGSC0003DMT400069888 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |