PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00204g10013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 722aa MW: 79820.9 Da PI: 6.2556 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 60 | 115 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F++n++p+ ++r+eL k+lgL+ q+k+WFqN+R+++k Peinf101Scf00204g10013.1 60 KKRYHRHTQHQIQEMETFFKENPHPDDKQRKELGKRLGLEPLQIKFWFQNKRTQMK 115 688999***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-19 | 44 | 117 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-21 | 45 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-18 | 58 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.77E-18 | 60 | 118 | No hit | No description |
Pfam | PF00046 | 4.8E-17 | 60 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF55961 | 6.87E-28 | 239 | 476 | No hit | No description |
PROSITE profile | PS50848 | 37.688 | 239 | 477 | IPR002913 | START domain |
CDD | cd08875 | 1.78E-108 | 243 | 473 | No hit | No description |
SMART | SM00234 | 5.0E-56 | 248 | 474 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-45 | 249 | 474 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.43E-26 | 494 | 718 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MFKPNMFESH HHLLDMSTNK MPENEMDFIR DEEFESKSGT EIMEAPNSGD DQDPNTRPKK 60 KRYHRHTQHQ IQEMETFFKE NPHPDDKQRK ELGKRLGLEP LQIKFWFQNK RTQMKAQHER 120 HENTQLRNEN EKLRNENIRY KEALSNAACP NCGGPAAIGE MSFDEQHLRI ENARLREEID 180 RISGIAAKYV GGKPILSYPA LPPPEAPRSL DLGFGPQSGL LGEMYNASDL LRTAVSGLTD 240 AEKPMVIELA VAAMEELVRM AQTSEPLWLS SPKGNIEILS EEEYVRAFPR GIGPKPISLR 300 TEASRESAVV IMNHINLVEI LMDVNQWTNV FAGLVSKAMT LEVLSTGVAG NYNGALQVMT 360 AEFQVPSPLV PTRENYFVRY CKQHADGTWA VVDVSLDNLR PTSVSRCRRR PSGCLIQELP 420 NGYSKVSPTS ENLIGLEFQH WLSDISSWLK VIYILSLAFG AKRWVATLDR QCERLASAMA 480 NNIPTGDVGI ITSPAGRKSM LKLAERMVLS FCAGVGASTT HTWTTLSGSG ADDVRVMTRK 540 SVDDPGRPPG IVLSAATSFW LPVSPKRVFN FLRDENSRSE WDILSNGGLV QEMAHIANGR 600 DPGNCVSLLR VNSGNSSQSN MLILQESSTD STGSYVIYAP VDIVAMNVVL NGGDPDYVAL 660 LPSGFAILPD ANPEVGTPCT LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKTA 720 VT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019223778.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A1J6IN90 | 0.0 | A0A1J6IN90_NICAT; Homeobox-leucine zipper protein meristem l1 | ||||
STRING | XP_009605863.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |