PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00162g00008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SRS

Protein Properties

Length: 346aa MW: 37631.4 Da PI: 8.484

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00162g00008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	230.2	3.8e-71	119	276	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelks 80 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++ ++ ++++s+ +++ ++ Peinf101Scf00162g00008.1 119 GGGINCQDCGNQAKKDCQHLRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLAALQQQNQVQQqtqqlslRADQSNIPKRPRE 203 5789*************************************************999888776667888886666666666677 PP DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +s+l++t+l++ +s e+ + +P+evss+avfrcvrvs++dd+e++laYqtav+igGh+fkGiLydqG+e+ Peinf101Scf00162g00008.1 204 NPSSNLACTRLPNISSGLEVGGH-FPAEVSSQAVFRCVRVSAIDDAEDQLAYQTAVNIGGHLFKGILYDQGPES 276 899*******999877766.**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.5E-68	121	275	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-26	123	165	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.4E-28	226	274	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MSGFFTLGGG NKDQEQELAT NSLLLFKNEE IYNKGFELWQ QYYQLHQQRA QSPHHHQHLQ 60 QTNHQDVDFS VGVGPSNNNR RIVSGSSNSS SGNNNLDDYN SFRSGFRVMR SSSGGGGGGG 120 GINCQDCGNQ AKKDCQHLRC RTCCKSRGFQ CSTHVKSTWV PAAKRRERQQ QLAALQQQNQ 180 VQQQTQQLSL RADQSNIPKR PRENPSSNLA CTRLPNISSG LEVGGHFPAE VSSQAVFRCV 240 RVSAIDDAED QLAYQTAVNI GGHLFKGILY DQGPESRYAT GGGEGSSGGG ASQQALNFIT 300 GATTSTTAAA TTSHQQPPVT MYDPSVYPTP ITAFMAGTQF FPPPRP

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MSGFFTLGGG NKDQEQELAT NSLLLFKNEE IYNKGFELWQ QYYQLHQQRA QSPHHHQHLQ  60
QTNHQDVDFS VGVGPSNNNR RIVSGSSNSS SGNNNLDDYN SFRSGFRVMR SSSGGGGGGG  120
GINCQDCGNQ AKKDCQHLRC RTCCKSRGFQ CSTHVKSTWV PAAKRRERQQ QLAALQQQNQ  180
VQQQTQQLSL RADQSNIPKR PRENPSSNLA CTRLPNISSG LEVGGHFPAE VSSQAVFRCV  240
RVSAIDDAED QLAYQTAVNI GGHLFKGILY DQGPESRYAT GGGEGSSGGG ASQQALNFIT  300
GATTSTTAAA TTSHQQPPVT MYDPSVYPTP ITAFMAGTQF FPPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599252.1	1e-154	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
Swissprot	K4B6C9	8e-86	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1U7XU90	1e-149	A0A1U7XU90_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X1
STRING	XP_009599252.1	1e-153	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-61	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]