PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ERF

Protein Properties

Length: 166aa MW: 18956.5 Da PI: 10.1025

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00149g02001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.8e-17	16	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Peinf101Scf00149g02001.1 16 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 65 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.44E-20	16	73	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.997	16	73	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-36	16	79	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-10	17	65	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	17	28	IPR001471	AP2/ERF domain
CDD	cd00018	1.42E-27	17	74	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.9E-29	17	74	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	55	75	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0001078	Molecular Function	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MMEGEKRKQR QQQDKPYRGI RMRKWGKWVA EIREPNKRSR IWLGSYSSPV AAARAYDTAV 60 FYLRGPSARL NFPECIVDVV DHQIHDLSAA TIRKKATEVG ARVDALQTAI RGGSNSTTSD 120 FTSNSNTTRE GLQLKLCSHE NLDFLLLFSN ESTRSEAYPD FLLLFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	7e-15	13	73	2	63	ATERF1
3gcc_A	7e-15	13	73	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00595	DAP	Transfer from AT5G67190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001335346.1	9e-76	DEAR1-like TCP binding protein
Swissprot	Q9FH94	5e-49	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A3Q7H1Z8	3e-74	A0A3Q7H1Z8_SOLLC; Uncharacterized protein
STRING	Solyc04g078640.1.1	3e-74	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA943	23	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	5e-51	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]