PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g13028.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 283aa    MW: 30372.1 Da    PI: 6.3418
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g13028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.3e-16195230134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cg ++  Tp++Rrgpdg+++LCnaCGl ++ kg
  Peinf101Scf00049g13028.1 195 CRHCGISSksTPMMRRGPDGPRSLCNACGLTWANKG 230
                               *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.1E-487123IPR010399Tify domain
PROSITE profilePS5132010.78887122IPR010399Tify domain
PfamPF062009.0E-991113IPR010399Tify domain
PROSITE profilePS5101713.374126168IPR010402CCT domain
PfamPF062031.2E-16126168IPR010402CCT domain
PROSITE profilePS501149.407189246IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-11189242IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-12191242No hitNo description
CDDcd002021.48E-13194237No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15194236IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.5E-14195230IPR000679Zinc finger, GATA-type
PROSITE patternPS003440195222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTSDRHHHFS VVDGGDDDVD TDEITGSGGG ESIDNPPSHH IRYDYHHAHP HALHNSNMEE  60
EAAVDGGVSN HALYVPGSDI VVHGGGGGGG SDQLTLSFRG QVYVFDAVSP EKASGEVPGR  120
LNQPQREASL NRFREKRKER CFDKKIRYTV RKEVALRMQR KKGQFTSSKS VSDEAGSSSA  180
EGNAGSSQEE QESSCRHCGI SSKSTPMMRR GPDGPRSLCN ACGLTWANKG ILRDLSKVST  240
VTVQEHSFKG ADQSNGEVNG SEAMAAAGII TSDGENTVLT PEH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612271e-131GQ261227.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616899.11e-125PREDICTED: GATA transcription factor 24-like
RefseqXP_016446080.11e-125PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL71e-66GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3Y1U51e-124A0A1S3Y1U5_TOBAC; GATA transcription factor 24-like
STRINGXP_009616899.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-59ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]