PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00049g01024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 359aa MW: 38751.9 Da PI: 9.2463 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 101.5 | 6.8e-32 | 75 | 143 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak y++rhkvC++hsk+p+v+v+gleqr fh+l efD++krsCrrrLa hnerrrk+ Peinf101Scf00049g01024.1 75 RCQVEGCQVDLSNAKAYYSRHKVCSMHSKSPTVVVAGLEQR-------FHQLPEFDQGKRSCRRRLACHNERRRKP 143 6**************************************97.......7*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.9E-26 | 69 | 130 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.718 | 73 | 143 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-31 | 74 | 146 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.1E-22 | 76 | 142 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MELSSVSSNS NSSSSDSLNG LKFGKKIYFG NVGIGVEAKK ESVSLPVTGT DHLPPAPVMS 60 KRGRSGMVQG GQPPRCQVEG CQVDLSNAKA YYSRHKVCSM HSKSPTVVVA GLEQRFHQLP 120 EFDQGKRSCR RRLACHNERR RKPPSGSLFS AHYGSLSSST FENNSSRSGS ILLDFSSPPK 180 LNESSWPNTR ESEQGWDHQS TASGKFLQRP WLNSSESVTN DIVLQGSATR TSYPCPGVPS 240 GDCFPGASGS SGALSLLSNR SWESRNRPSS LANIHGVHTI QPSSSHGAPT NHFSRPSLVF 300 KGNEASSSSH EMPPDLGLGQ MTHAANNQYS SELGMAQHME LDHSKGGYHA SVQNVHWTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-21 | 76 | 142 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362236.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2K9ZY74 | 0.0 | A0A2K9ZY74_PETHY; Squamosa promoter binding-like protein 9b | ||||
STRING | PGSC0003DMT400029751 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4571 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 4e-36 | squamosa promoter binding protein-like 15 |