PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01340g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 16536.3 Da PI: 8.9707 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.3 | 1.1e-12 | 60 | 135 | 14 | 88 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 + +p +f+ ++ + +++t++l +sg+s v l+++ ++++ +t+G k + n+Lk+gD+++F+ld++ + Peaxi162Scf01340g00002.1 60 PFMHIPMEFCHSNALF--KNTTIRLIGPSGESCHVSLRICSGGKTlyACMTTGLKVLFSRNELKVGDICIFQLDRTrN 135 4589*********877..4569***************66555555888899*********************997533 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-13 | 42 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-13 | 45 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.62E-10 | 46 | 133 | No hit | No description |
Pfam | PF02362 | 4.8E-10 | 61 | 136 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MNFSIILLDS AGCDKKSLKL EDVEREVPSR VKKPKFADCS KGSSEFTARI KEYNIRKRSP 60 FMHIPMEFCH SNALFKNTTI RLIGPSGESC HVSLRICSGG KTLYACMTTG LKVLFSRNEL 120 KVGDICIFQL DRTRNDSTSI TMDVCVM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619629.1 | 2e-67 | PREDICTED: putative B3 domain-containing protein REM15 | ||||
Refseq | XP_018631640.1 | 2e-67 | PREDICTED: putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A1S3X5P5 | 3e-65 | A0A1S3X5P5_TOBAC; putative B3 domain-containing protein REM15 isoform X1 | ||||
STRING | XP_009619629.1 | 9e-67 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |