PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01147g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TALE | ||||||||
Protein Properties | Length: 332aa MW: 38214.4 Da PI: 4.8872 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.8e-09 | 276 | 309 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ LA+++gL+ +q+ +WF N+R ++ Peaxi162Scf01147g00014.1 276 WPYPTEADKNSLAESTGLDPKQINNWFINQRKRH 309 58*****************************885 PP | |||||||
2 | ELK | 30.7 | 6.8e-11 | 229 | 250 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrK++++L++Lk EFs Peaxi162Scf01147g00014.1 229 ELKDRLLRKFGSHLSTLKLEFS 250 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-18 | 99 | 143 | IPR005540 | KNOX1 |
Pfam | PF03790 | 8.9E-21 | 101 | 142 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.3E-25 | 149 | 200 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.6E-25 | 152 | 199 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.3E-7 | 229 | 250 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.057 | 229 | 249 | IPR005539 | ELK domain |
SMART | SM01188 | 1.1E-5 | 229 | 250 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.908 | 249 | 312 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-20 | 250 | 323 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.2E-14 | 251 | 316 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 254 | 313 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.35E-13 | 261 | 313 | No hit | No description |
Pfam | PF05920 | 1.7E-17 | 269 | 308 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 287 | 310 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MDQHEMYGFH PTSDYADKAL MSPENLMMQA EYNNIYHNTL STPMFGLSDD VQLSSEAASN 60 FTNPHENIHH HQARGNCGSS NNRRRDDNNN DDIDEGGSSI IKAKIISHPY YPKLLDAYID 120 CQKVGAPSEM INILEEMRQQ NDFRKPNATS ICIGADPELD EFMETYCDIL VKYKSDLSRP 180 FNEATTFLNN IELQLTNLCK DDGSLSSDEE FSCGEAEVQD ASMRSEDNEL KDRLLRKFGS 240 HLSTLKLEFS KKKKKGKLPK EARQMLLAWW NDHYRWPYPT EADKNSLAES TGLDPKQINN 300 WFINQRKRHW KPSENMQLAV MDNISGQFYS DD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ409541 | 0.0 | GQ409541.1 Petunia x hybrida HERMIT-like protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591588.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 1e-119 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | E2CZB4 | 0.0 | E2CZB4_PETHY; HERMIT-like protein 2 | ||||
STRING | XP_009591588.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA753 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-105 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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