PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00984g00118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 536aa MW: 60699.4 Da PI: 6.5712 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.6e-07 | 89 | 111 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f++ G+C+ G+rC+F Hgp Peaxi162Scf00984g00118.1 89 VPCYFYFN-GYCNKGERCSFLHGP 111 69******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.39 | 6 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 8.1E-12 | 6 | 66 | No hit | No description |
SMART | SM00356 | 0.0092 | 7 | 34 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.629 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 85 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-4 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-4 | 90 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-6 | 90 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MEEQLQKRNT DCVYFLASPL TCKKGIECEY RHSEIARLNP RDCWYWLAGS CLNPTCAFRH 60 APLENRAETS SGSAPAPNKS AVLVNKTNVP CYFYFNGYCN KGERCSFLHG PDDGTPAWKS 120 SKITSGIPDV PTAEKKTSAG SEPGPAPVEK HPNSSETGSE AVTHEYIKSK VDLHSMTNNF 180 GEPSASPETS GSPSEEATVV RSDSLVPAEA FTQGGSHLSP DRSSDEEVED NVEREEWLES 240 SPGFDVLVGD RVEGLSQEDD QKYLVHPEME DREPGEQFAG YDFEILEYDD AYPVMRNVSE 300 EELDKSYQSV VNQDINEYES VREILIPAHG RQQFPWKRKL PTELALRGRG NVDLRDLLKK 360 RRVIDDPLNH FSRRRDLSRL NAHEQGRDRH HQPQGSRWMP RRLSSKVESS ASFSRVKDDS 420 LLERANHQRR LRQFQGSSYR QHFKNSKWGR SRAFANEAPR RMVSRKRMTE VPMIFSAPKS 480 LAQIKEGKEK VGEDINSFER TGPSGGSERE DFLGPKPLSE ILRDKRRLGS VVSFCN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246777.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
TrEMBL | A0A1J6IAT8 | 0.0 | A0A1J6IAT8_NICAT; Zinc finger ccch domain-containing protein 32 | ||||
STRING | XP_009589189.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11433 | 9 | 11 |