PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00950g00058.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 695aa    MW: 76587.3 Da    PI: 5.6162
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00950g00058.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-2059114156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+  qVk+WFqN+R+++k
  Peaxi162Scf00950g00058.1  59 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 114
                               688999***********************************************998 PP
2START1227.9e-392453981135
                               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                               ela +a++elvk+a+ +ep+W  ss      +n++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +
  Peaxi162Scf00950g00058.1 245 ELAVAAMEELVKLAQTGEPLWIPSSenscVTLNEEEYARTFPRGVGskslgLNSEASRESAVVIMNHINLVEILMDVN-QWTTFF 328
                               57899********************999999**********997779*******************************.****** PP

                               S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS CS
                     START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqk 135
                               a    ka+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++
  Peaxi162Scf00950g00058.1 329 AglvsKATTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRP 398
                               ******************************************************************9876 PP
3START47.35.6e-16398443161206
                               EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               ++ vtw+ehv++++r +h+++r+lv+sgla+gak+wvatl+rqce+
  Peaxi162Scf00950g00058.1 398 PTSVTWIEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 443
                               689*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2139114IPR009057Homeodomain-like
SuperFamilySSF466895.85E-1941116IPR009057Homeodomain-like
PROSITE profilePS5007116.60156116IPR001356Homeobox domain
SMARTSM003897.4E-1858120IPR001356Homeobox domain
PfamPF000467.8E-1859114IPR001356Homeobox domain
CDDcd000861.30E-1759117No hitNo description
SuperFamilySSF559615.71E-29236445No hitNo description
PROSITE profilePS5084830.288236446IPR002913START domain
CDDcd088753.06E-109240442No hitNo description
SMARTSM002345.7E-48245443IPR002913START domain
PfamPF018529.3E-31246396IPR002913START domain
PfamPF018522.4E-11397443IPR002913START domain
SuperFamilySSF559615.38E-24461693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MFQQNMFDSH NFLLDMSNRT SENELDLIRD EEFESKSGTD IMEPSGDDQQ QDPNKRPKKK  60
QYHRHTQHQI QELESFFKEC PHPDDKQRKD LGKRLGLEPL QVKFWFQNKR TQMKAQHERH  120
ENTQLRNEND KLRADNIRYK EALSTATCPN CGGPATIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMLSYPHLP SPGPTRSLDL GMTNIGHQLG EMYSANDLLR SISGPTDADK  240
PMIIELAVAA MEELVKLAQT GEPLWIPSSE NSCVTLNEEE YARTFPRGVG SKSLGLNSEA  300
SRESAVVIMN HINLVEILMD VNQWTTFFAG LVSKATTLEV LSTGVAGNYN GALQVMTAEF  360
QVPSPLVPTR ENYFVRYCKQ HADGTWAVVD VSLDNLRPTS VTWIEHVEVD DRAVHNIYRP  420
LVNSGLAFGA KRWVATLDRQ CERLASVMAN NIPTGDVITS PEGRKSMLKL AERMAMSFCA  480
GVGASTAHTW TTLSGSGADD VRVMTRKSID DPGRPPGIVL SAATSFWLPV PTKRVFDFLR  540
HENSRSEWDI LSNGGLVQEM AHIANGRDSG NSVSLLRVNS GNSSQNNMLI LQESCTDSTG  600
SYVIYAPVDI AAMNVVLSGG DPDYVALLPS GFAILPDGST NHNGVGNPET NAGGSLLTVA  660
FQILVDSVPT AKLSLGSVAT VNSLINCTVE RIKAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609606.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1
RefseqXP_016458396.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A1S3Z1Q60.0A0A1S3Z1Q6_TOBAC; homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1
STRINGXP_009609606.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]