PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00827g00065.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 334aa    MW: 38629.4 Da    PI: 6.529
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00827g00065.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.55.4e-26224307186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               rW+k+ev+aL+ +r+ +++++ +g +k+  Weev++ +++ g+ r+pk+Ckekwen+nk+yk++ ++ k r +++ ++cpyf++l
  Peaxi162Scf00827g00065.1 224 RWPKSEVQALVSIRTALDHKFLKG-AKGSVWEEVADGLAKMGYIRTPKKCKEKWENINKYYKRTIDSGKAR-PKNYRSCPYFHEL 306
                               8**********************9.99******************************************98.888899******9 PP

                  trihelix  86 e 86 
                               +
  Peaxi162Scf00827g00065.1 307 D 307
                               8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.515217280IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.5E-4222279IPR009057Homeodomain-like
PfamPF138374.2E-21223309No hitNo description
CDDcd122039.61E-20223286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDGDGHRSNA VVYCHPPPEI THLSSPPRKL RPVRLGSNYV DNRMNGELGF MSENAEAVDQ  60
MKSEFDSDVF HLISQARLLE AQFSSSSDDT ESSEPEAVEE QLNRKRKRET RNTLKLYLED  120
MVRRLMDKQE QMHKQLIEMM EKKEQERIIR EEAWKQQEME RAKRDEEVRA EETSRSLALI  180
SFLKNLLGDE FQIPKSSEIS SLVKYEGEAH GQEADARSDS CNRRWPKSEV QALVSIRTAL  240
DHKFLKGAKG SVWEEVADGL AKMGYIRTPK KCKEKWENIN KYYKRTIDSG KARPKNYRSC  300
PYFHELDELY KSGLLAQGTG NCVKSETESK NVEE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497337.11e-172PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A1S4C7V81e-170A0A1S4C7V8_TOBAC; trihelix transcription factor GT-2-like
STRINGXP_009771160.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-47Trihelix family protein