PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00724g00713.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRF

Protein Properties

Length: 349aa MW: 39864.4 Da PI: 8.8776

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00724g00713.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.1	3.5e-24	80	123	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++ +k+CErH+hrgr+rsrk++e Peaxi162Scf00724g00713.1 80 DPEPGRCRRTDGKKWRCSKEAYQESKYCERHMHRGRNRSRKPVE 123 79***************************************997 PP
2	QLQ	56.7	7.2e-20	11	45	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+++++P+Pp+Ll i+ Peaxi162Scf00724g00713.1 11 LFTASQFQELEHQALIYKYMVSGMPIPPDLLYTIR 45 6*****************************97776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.4E-9	10	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.373	11	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.1E-15	12	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.251	80	124	IPR014977	WRC domain
Pfam	PF08879	3.6E-20	81	123	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MMSSATRSGY LFTASQFQEL EHQALIYKYM VSGMPIPPDL LYTIRRSSLD SSLISSKLIL 60 HQPQHVGWNY LQLGFGKKID PEPGRCRRTD GKKWRCSKEA YQESKYCERH MHRGRNRSRK 120 PVEVMTLTKS TNTSTRTTTT LPTAIPISSS EQHHSFLYPH YSSSRPPGIG LASQDHTKSL 180 LDSGAYSRNS YDYGMEEEAN KHVYYSEASG TMRSASGSSS IVDDSWQLAP LTMGSPLGHL 240 KQRTNYSVSQ NGHSYLQLQS LNNESSKQHH QRQDQYQYYA LGNDVKTENM HMKIDTEDHQ 300 PKKVMHHFFD ELPREDNKLS WLDSGDTFAK THLSISVPNS SHDFFITPN

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MMSSATRSGY LFTASQFQEL EHQALIYKYM VSGMPIPPDL LYTIRRSSLD SSLISSKLIL  60
HQPQHVGWNY LQLGFGKKID PEPGRCRRTD GKKWRCSKEA YQESKYCERH MHRGRNRSRK  120
PVEVMTLTKS TNTSTRTTTT LPTAIPISSS EQHHSFLYPH YSSSRPPGIG LASQDHTKSL  180
LDSGAYSRNS YDYGMEEEAN KHVYYSEASG TMRSASGSSS IVDDSWQLAP LTMGSPLGHL  240
KQRTNYSVSQ NGHSYLQLQS LNNESSKQHH QRQDQYQYYA LGNDVKTENM HMKIDTEDHQ  300
PKKVMHHFFD ELPREDNKLS WLDSGDTFAK THLSISVPNS SHDFFITPN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	1e-61	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019265537.1	1e-149	PREDICTED: growth-regulating factor 5-like
TrEMBL	A0A314L388	1e-148	A0A314L388_NICAT; Growth-regulating factor 5
STRING	XP_009615805.1	1e-145	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-46	growth-regulating factor 5