PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00673g00046.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TALE
Protein Properties Length: 331aa    MW: 37106.3 Da    PI: 4.7504
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00673g00046.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-092612932355
                               SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               +yp++ee+ +L++ +gL+ +q+ +WF N+R ++
  Peaxi162Scf00673g00046.1 261 PYPTEEEKNRLSEITGLDPKQINNWFINQRKRH 293
                               8*****************************885 PP
2ELK36.41.1e-12213234122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELK++L+rKYsgyL+sL++ F+
  Peaxi162Scf00673g00046.1 213 ELKEMLMRKYSGYLSSLRKDFL 234
                               9********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-1958102IPR005540KNOX1
PfamPF037903.1E-1960101IPR005540KNOX1
SMARTSM012561.9E-25109160IPR005541KNOX2
PfamPF037913.5E-25112159IPR005541KNOX2
PROSITE profilePS5121310.685213233IPR005539ELK domain
SMARTSM011888.8E-7213234IPR005539ELK domain
PfamPF037895.2E-10213234IPR005539ELK domain
PROSITE profilePS5007112.584233296IPR001356Homeobox domain
SuperFamilySSF466892.4E-19235306IPR009057Homeodomain-like
SMARTSM003893.6E-13235300IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-26238299IPR009057Homeodomain-like
CDDcd000861.18E-12245297No hitNo description
PfamPF059204.5E-16253292IPR008422Homeobox KN domain
PROSITE patternPS000270271294IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDELSKLHSA IACSSNNNNV VGVLDNIIRQ QEGPVNNSDN NNSLEAVHQA EKALEMSDLI  60
KAQIANHPLY PNLVSAYLQC RKVGAPHEMA SILEEISKEN HQLISSCHSS IEIGTDPELD  120
EFMESYCAVL LKYKEELSKP FDEATTFLNN IESQLTNLCK DNLITSTTTS SFNSNNYLSG  180
DEAGGTSDED ICCGEMEATD GQESPANREG ENELKEMLMR KYSGYLSSLR KDFLKKRKKG  240
KLPKDARTAL LDWWNTHYRW PYPTEEEKNR LSEITGLDPK QINNWFINQR KRHWRPSEDM  300
KYALMEGVSG SNINAGSMYF DGAGGTGSIG T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228237LRKDFLKKRK
2234238KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4095420.0GQ409542.1 Petunia x hybrida HERMIT-like protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312933.10.0homeobox protein knotted-1-like 1
RefseqXP_016499152.10.0PREDICTED: homeobox protein knotted-1-like 1
RefseqXP_016499153.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-105KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLE2CZB50.0E2CZB5_PETHY; HERMIT-like protein 3
STRINGXP_009596945.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.13e-77KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]