PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00672g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 259aa MW: 30215.7 Da PI: 5.2851 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.5 | 1.7e-26 | 83 | 173 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtklel 83 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ + +k r + ++tr gC a+l+v +++ kw+vtk+++ Peaxi162Scf00672g00010.1 83 DFYMAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYIH-KKDRVllPPPVTREGCPAMLRVALRDGTKWVVTKFVE 166 6******************************************9887.3333345999*************************** PP FAR1 84 eHnHela 90 eHnH+l+ Peaxi162Scf00672g00010.1 167 EHNHALM 173 *****97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.9E-24 | 83 | 173 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MSEVFMESPS SHAFDVDERK DFLPVDSNDD HGYLEEELTA GMGMYVAEDD KYLGQSNEDQ 60 SSSDNAIEPQ IGMEFNSRDD ARDFYMAYGR RTGFTVRIHH NRRSRINNMV IGQDFVCSKE 120 GFREKKYIHK KDRVLLPPPV TREGCPAMLR VALRDGTKWV VTKFVEEHNH ALMSPSKVPW 180 RGSAKNSVSQ DEKDQRIRDL TLELYNERQR CKWRCAAYQE QLQTLLKFIE DHTDQLSRSV 240 EQAVQRVKEL ENERLEDSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016450611.1 | 1e-162 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
Refseq | XP_016450612.1 | 1e-162 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
Refseq | XP_016450613.1 | 1e-162 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
TrEMBL | A0A1S3YF26 | 1e-161 | A0A1S3YF26_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
STRING | XP_009779431.1 | 1e-161 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14445 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-39 | FAR1 family protein |