PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00628g00311.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TALE
Protein Properties Length: 313aa    MW: 35592.6 Da    PI: 6.9689
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00628g00311.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-092402742155
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Peaxi162Scf00628g00311.1 240 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 274
                               669*****************************885 PP
2ELK36.31.2e-12194215122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELK++Ll+KYsgyL+sLkqE+s
  Peaxi162Scf00628g00311.1 194 ELKNHLLKKYSGYLSSLKQELS 215
                               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-1593137IPR005540KNOX1
PfamPF037902.0E-2095136IPR005540KNOX1
PfamPF037895.9E-10194215IPR005539ELK domain
SMARTSM011881.0E-6194215IPR005539ELK domain
PROSITE profilePS5121311.243194214IPR005539ELK domain
PROSITE profilePS5007112.957214277IPR001356Homeobox domain
SuperFamilySSF466891.15E-19215290IPR009057Homeodomain-like
SMARTSM003892.8E-13216281IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27219280IPR009057Homeodomain-like
CDDcd000862.66E-12226278No hitNo description
PfamPF059208.4E-17234273IPR008422Homeobox KN domain
PROSITE patternPS000270252275IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MENYNQLGEN SAQRGNFFYG GNSVLAPPNS SIYDDQSQVV AHPIVKTEGG SSSNTSHHHH  60
TFQYPSIIRS GHHQHQTVHN HHHESENSSG EVVGLKAKIL AHPQCSSLLD AYMDCQKVGA  120
PPEVMARLST LRQEFEMRQR ASLTGKDVAK DPELDQFMVK DNKCEGVGSS EEDQDNSGGE  180
TELPEIDPRA EDRELKNHLL KKYSGYLSSL KQELSKKKKK GKLPKDARQK LLSWWELHYK  240
WPYPSESEKV ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDGLH HHPQNAALYI  300
EGHYMGEGPF RLG
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4095440.0GQ409544.1 Petunia x hybrida KNOTTED1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441623.11e-176PREDICTED: homeotic protein knotted-1-like isoform X2
SwissprotQ413301e-153KN1_SOLLC; Homeotic protein knotted-1
TrEMBLE2CZB70.0E2CZB7_PETHY; KNOTTED1-like protein
STRINGXP_009598343.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-93KNOTTED-like from Arabidopsis thaliana