PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00548g00017.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRF
Protein Properties Length: 580aa    MW: 62965.9 Da    PI: 7.9999
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00548g00017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC788.9e-25199243145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Peaxi162Scf00548g00017.1 199 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKPVEG 243
                               79****************************************985 PP
2QLQ60.64.4e-21130166137
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               ++FT++Q+++L++Q+l+yK+++an+PvP++Ll +++k
  Peaxi162Scf00548g00017.1 130 GPFTPSQWMELEHQALIYKHIVANVPVPHQLLIPLKK 166
                               59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.7E-13130166IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.416131166IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-15131164IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954199243IPR014977WRC domain
PfamPF088793.0E-21200242IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDFCGVMNAT TMETCQESVN TKSNSNSING SGHLKQERSS LYDDDETLRP FKVCKQMAQQ  60
RSGHSTMLSF STQKSEEIPF LYNNSSVVQD SSKSLSFPLF DSGSHYSRAS AYGLGGPNES  120
TRGPFARFRG PFTPSQWMEL EHQALIYKHI VANVPVPHQL LIPLKKSLNP YAFSGLSSGS  180
YASNWGWGTF HLGFAGNTDP EPGRCRRTDG KKWRCSREAV PDQKYCERHI NRGRHRSRKP  240
VEGQNGHAVS GSTTSKVASV APSSATVISS CGASNSLGAI QHQFNSLQPS AVNPSTDQLV  300
NRILTKKYVY DRMQDHKGVS VVSPMIGLKP KDSAISVQKQ HNGFGLSSLS EFGLVSSDSL  360
LNPSQRSSFV NPKNSDAFLD FNTQEQSEQH PVHHFIDGWT KEQSSRASAS WPDELKSDWT  420
QLSMSIPMAD SDFQSSSSSR QDKLTLSPLR LSRDFDPIQM GLGVTNSNGE PMQKTATWIP  480
VSWGNSLGGP LGEVLNSTAG NAGDGKNYSA LNLATEVWDN SPPFGSSPTG VLQKSTFVSL  540
SNSSSGSSPR AESKKVDEGV GMCDEVIGST LASSLCIPSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589483.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1S3XCF00.0A0A1S3XCF0_TOBAC; growth-regulating factor 1-like
STRINGXP_009589483.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-109growth-regulating factor 1