PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00538g00224.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 600aa    MW: 69387.8 Da    PI: 9.0625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00538g00224.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-06324223
                              EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                              +C+ C+ +F+ + +Lk+H+++H
  Peaxi162Scf00538g00224.1  3 TCEECDVTFKKPAHLKQHMQSH 24
                              6*******************99 PP
2zf-C2H2171.6e-056387123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                              ++C+  dC  s++rk++L+rH+  H
  Peaxi162Scf00538g00224.1 63 FVCHvdDCQSSYRRKDHLMRHLLQH 87
                              89*******************9887 PP
3zf-C2H212.60.0004292117123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               +kCp   C+ +Fs + n+ +H ++ H
  Peaxi162Scf00538g00224.1  92 FKCPvdGCKSTFSFQGNMSQHVKKiH 117
                               89*********************999 PP
4zf-C2H221.27.9e-07263284223
                               EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                               +C+ Cg sF+ + +Lk+H+++H
  Peaxi162Scf00538g00224.1 263 TCEECGVSFKKPAHLKQHMQSH 284
                               6*******************99 PP
5zf-C2H2171.6e-05290314123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++C+  dC  s++rk++L+rH+  H
  Peaxi162Scf00538g00224.1 290 FVCHvdDCQSSYRRKDHLTRHLLQH 314
                               89*******************9887 PP
6zf-C2H212.60.00042319344123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               +kCp   C+ +Fs + n+ +H ++ H
  Peaxi162Scf00538g00224.1 319 FKCPvdGCKSTFSFQGNMSQHVKKiH 344
                               89*********************999 PP
7zf-C2H218.17.4e-06359382223
                               EET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                               +Cp   Cgk+F+  s L++H  +H
  Peaxi162Scf00538g00224.1 359 VCPeaGCGKVFKYASKLRKHEDSH 382
                               8*******************9888 PP
8zf-C2H219.42.9e-06478502223
                               EET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                               kC+  dC  +Fs++snL++Hi+  H
  Peaxi162Scf00538g00224.1 478 KCEfkDCQHTFSTRSNLVQHIKAvH 502
                               69999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.471229IPR007087Zinc finger, C2H2
SMARTSM003550.0052224IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.34E-5324No hitNo description
PfamPF128746.3E-5324No hitNo description
Gene3DG3DSA:3.30.160.607.6E-5325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280424IPR007087Zinc finger, C2H2
SuperFamilySSF576676.34E-55887No hitNo description
Gene3DG3DSA:3.30.160.602.2E-76289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.056387IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3496392IPR007087Zinc finger, C2H2
PROSITE patternPS0002806587IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-673137No hitNo description
Gene3DG3DSA:3.30.160.601.7E-590118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.05892117IPR007087Zinc finger, C2H2
SMARTSM003550.005192117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094117IPR007087Zinc finger, C2H2
SMARTSM0035533217239IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.95E-9260314No hitNo description
SMARTSM003550.0033262284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.11262289IPR007087Zinc finger, C2H2
PfamPF128749.4E-4263284No hitNo description
Gene3DG3DSA:3.30.160.603.1E-6263280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-11281316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.035290314IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411290319IPR007087Zinc finger, C2H2
PROSITE patternPS000280292314IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-5300344No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5317345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0051319344IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058319344IPR007087Zinc finger, C2H2
PROSITE patternPS000280321344IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-7355384IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.473358387IPR007087Zinc finger, C2H2
SMARTSM003550.01358382IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280360382IPR007087Zinc finger, C2H2
SMARTSM003559.3419444IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280421444IPR007087Zinc finger, C2H2
SMARTSM0035513447468IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.44E-9459515No hitNo description
PROSITE profilePS5015713.547477507IPR007087Zinc finger, C2H2
SMARTSM003550.0011477502IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-6478504IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280479502IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-5505530IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035511508534IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280510534IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MNTCEECDVT FKKPAHLKQH MQSHSIEIEV MREILWNYVK EGGPPEKLHQ VSLNHTLKYG  60
WPFVCHVDDC QSSYRRKDHL MRHLLQHQGK LFKCPVDGCK STFSFQGNMS QHVKKIHDPS  120
VSPKVDPPKQ YVCPEVGWVK GDFVETDEQF RSRPRDGRKR KLPVFKDIMR KRIAPPSGTD  180
RVFNQGSEYL SWLLSVESDD ELRVRKMGEK KRDIRRYYCE YCGLCRSKKS LISSHILSHH  240
HQDEIERPGN EDANVKEGPK MNTCEECGVS FKKPAHLKQH MQSHSIQRPF VCHVDDCQSS  300
YRRKDHLTRH LLQHQGKLFK CPVDGCKSTF SFQGNMSQHV KKIHDPSVSP KVDPPKQCVC  360
PEAGCGKVFK YASKLRKHED SHGKSNLKIL IFLLLCVLKT SNNIKLLCIY AVKLETVEAL  420
CLEPGCMKHF TNEKCLKEHI NTCHQHIVCE ICGTKQLKKN IKRHLRTHEE GPTSERVKCE  480
FKDCQHTFST RSNLVQHIKA VHLGDKPFSC GIPGCGMKFA FKHVRDRHEK SGCHVYTPGD  540
FVETDEQFRS RPRGGRKRKL PVFEDIMRKR ITPPSGTDRV FNQGSEYLSW LLSVESDDEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A9e-1426638219129PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D9e-1426638219129PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1550558RPRGGRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453639.10.0PREDICTED: transcription factor IIIA-like isoform X2
TrEMBLA0A1S3YMZ90.0A0A1S3YMZ9_TOBAC; transcription factor IIIA-like isoform X2
STRINGXP_009592258.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-104transcription factor IIIA