PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00535g00042.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TALE

Protein Properties

Length: 752aa MW: 82454.1 Da PI: 6.9699

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00535g00042.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	532	569	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Peaxi162Scf00535g00042.1 532 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 569 664459******************************88 PP
2	BELL	94.2	1.2e-30	410	464	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+ Peaxi162Scf00535g00042.1 410 KVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 464 7***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.8E-68	332	462	IPR006563	POX domain
Pfam	PF07526	1.3E-42	337	461	IPR006563	POX domain
PROSITE profile	PS50071	12.568	510	573	IPR001356	Homeobox domain
CDD	cd00086	1.23E-12	513	574	No hit	No description
SMART	SM00389	1.2E-9	513	577	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.51E-17	515	580	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-29	516	579	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	530	569	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MGIASTPPRP YVTSHNSKGD NPIIHQVIEK ANSMSQDYHH QSLFNFSNGF ERSQAEQQQQ 60 QQQQHHMAQQ IRRDKLRVQG FDPPPFEEEE ASGLPVYHET AGMLSEMFNF PPGTVTTATT 120 ELLESQFNQN FRHPNQNPRS QPTATGMGGE WFGSRQGMIV GAASHQQVPL GYGKNHNNQI 180 SSAISVADSA AAMQLFLMNP PQPRSPSSPS PSSHHHHNNP PSTLHMLLPN PSSTSTLQGF 240 PNPAEGSFGQ FTTHLTTPNE IGGINVVESQ GLSLSLSSSL QHLDATKESE MLFFNQGGSN 300 SGQFRYKNLS IGGGGVTQNN LQQVHVGYGS SLGVVNVLRN SKYAKAAQEL LEEFCSVGRG 360 KFKKSNNKAA TNPNTNNPSG GGGNNNTSSS SSKDVPPLSA ADRIEHQRRK VDRRYNHYCE 420 QMQMVVNSFD LVMGFGAAVP YTALAQKAMS RHFRCLKDAI AAQLKHSCEL LGEKDAGTSG 480 ITKGETPRLK MLEQSLRQQR AFHQMGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP 540 SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ QEAKEEDDEE DEKSQSPNSG 600 HGINSTNAQT PTPNSSSTNI MTTTTTAAAT ETVTAATVIT TTTTTASTIV NKRSEINALH 660 ENDPSLIAIN SHISTTFSEN QASSNFPTII HDPSDCRRGN FPGEDYAADD VGSTMIRFGT 720 STTTAGDVSL TLGLRHAGNL PENNNSNTHF FG

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MGIASTPPRP YVTSHNSKGD NPIIHQVIEK ANSMSQDYHH QSLFNFSNGF ERSQAEQQQQ  60
QQQQHHMAQQ IRRDKLRVQG FDPPPFEEEE ASGLPVYHET AGMLSEMFNF PPGTVTTATT  120
ELLESQFNQN FRHPNQNPRS QPTATGMGGE WFGSRQGMIV GAASHQQVPL GYGKNHNNQI  180
SSAISVADSA AAMQLFLMNP PQPRSPSSPS PSSHHHHNNP PSTLHMLLPN PSSTSTLQGF  240
PNPAEGSFGQ FTTHLTTPNE IGGINVVESQ GLSLSLSSSL QHLDATKESE MLFFNQGGSN  300
SGQFRYKNLS IGGGGVTQNN LQQVHVGYGS SLGVVNVLRN SKYAKAAQEL LEEFCSVGRG  360
KFKKSNNKAA TNPNTNNPSG GGGNNNTSSS SSKDVPPLSA ADRIEHQRRK VDRRYNHYCE  420
QMQMVVNSFD LVMGFGAAVP YTALAQKAMS RHFRCLKDAI AAQLKHSCEL LGEKDAGTSG  480
ITKGETPRLK MLEQSLRQQR AFHQMGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP  540
SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ QEAKEEDDEE DEKSQSPNSG  600
HGINSTNAQT PTPNSSSTNI MTTTTTAAAT ETVTAATVIT TTTTTASTIV NKRSEINALH  660
ENDPSLIAIN SHISTTFSEN QASSNFPTII HDPSDCRRGN FPGEDYAADD VGSTMIRFGT  720
STTTAGDVSL TLGLRHAGNL PENNNSNTHF FG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	519	577	5	63	Homeobox protein Meis2
3k2a_B	2e-16	519	577	5	63	Homeobox protein Meis2
4xrm_A	2e-16	519	577	5	63	Homeobox protein Meis2
4xrm_B	2e-16	519	577	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406699	0.0	AF406699.1 Solanum tuberosum BEL1-related homeotic protein 13 (Bel13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776283.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-165	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U7WCA3	0.0	A0A1U7WCA3_NICSY; BEL1-like homeodomain protein 2
STRING	XP_009776283.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-143	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]