PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00432g00076.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 295aa MW: 34700.3 Da PI: 8.6739

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00432g00076.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.3	1.2e-39	36	161	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 p G+rF P+ eel+v+yLkkkv +++l+ + i ev++ ++ ++L + +e+ewyfF++rd ky++g+r+nra+ gyWka Peaxi162Scf00432g00076.1 36 PLGYRFCPRVEELIVHYLKKKVMNDSLPY-DNIVEVNLSQYSLQQLSeIYAMVGENEWYFFTPRDWKYRNGTRPNRAAGIGYWKA 119 89*************************.88**********8445556899************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+ ++ k+ +vg +k Lvfykg+ +kgekt+W+mh yr+ Peaxi162Scf00432g00076.1 120 TGADKPRKH-KSVTVGFRKALVFYKGTPQKGEKTNWIMHKYRV 161 ****9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-48	31	187	IPR003441	NAC domain
PROSITE profile	PS51005	45.631	35	187	IPR003441	NAC domain
Pfam	PF02365	2.8E-23	36	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MADEQSKANL KPCCRAQNPK TEKQEQEQQK VSFTFPLGYR FCPRVEELIV HYLKKKVMND 60 SLPYDNIVEV NLSQYSLQQL SEIYAMVGEN EWYFFTPRDW KYRNGTRPNR AAGIGYWKAT 120 GADKPRKHKS VTVGFRKALV FYKGTPQKGE KTNWIMHKYR VNGSCVARKD ENDMRLDNWV 180 LCRIYQKMDK SVKIAQRELS SPLIKNYHVW KNCDYEETND SIESVSAHKD NIHHTSVDSS 240 VTLVDSYIEG FSKLPANYPY PFHDEPKPTY FHMAQTWINY VPDYMNDVQW DAPVY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-47	24	187	4	168	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019223878.1	1e-111	PREDICTED: NAC transcription factor 29-like
Swissprot	Q8H4S4	6e-51	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A314KWQ1	1e-110	A0A314KWQ1_NICAT; Nac domain-containing protein 68
STRING	XP_009769770.1	1e-110	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	1e-52	NAC domain containing protein 32

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]