PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00420g00640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WRKY | ||||||||
Protein Properties | Length: 148aa MW: 16950 Da PI: 10.1436 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.3 | 6.6e-33 | 69 | 127 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk++++prsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ Peaxi162Scf00420g00640.1 69 LDDGYRWRKYGQKAVKNNNNPRSYYRCTHQGCNVKKQVQRLSKDEGVVVTTYEGIHTHP 127 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.3E-35 | 54 | 127 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-30 | 61 | 128 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.056 | 64 | 129 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-39 | 69 | 128 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 70 | 127 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MNEWFSGLKT ENISNSTAQD VSNIKSSNLG VVSSETTQTT NLSSFKKKGD KKIKKPRIAF 60 QTRSQVDILD DGYRWRKYGQ KAVKNNNNPR SYYRCTHQGC NVKKQVQRLS KDEGVVVTTY 120 EGIHTHPIDK PTDNFEQILH QMHIYPAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 59 | 128 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 59 | 128 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 1e-49 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630533.1 | 4e-78 | PREDICTED: probable WRKY transcription factor 43 | ||||
Refseq | XP_016444143.1 | 4e-78 | PREDICTED: probable WRKY transcription factor 43 | ||||
Swissprot | Q9FYA2 | 1e-49 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | A0A1S3XW28 | 1e-76 | A0A1S3XW28_TOBAC; probable WRKY transcription factor 43 | ||||
STRING | XP_009630533.1 | 2e-77 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2204 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 6e-52 | WRKY DNA-binding protein 75 |