PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00392g00416.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 1190aa MW: 130347 Da PI: 4.693

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00392g00416.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	393	415	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C +C+ +F++k++L +H+ + H Peaxi162Scf00392g00416.1 393 QCDKCNVTFNNKDDLLQHQLSsH 415 8******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.766	262	335	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	4.2E-6	267	315	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	2.94E-8	268	316	IPR016177	DNA-binding domain
SuperFamily	SSF57667	3.97E-5	392	459	No hit	No description
SMART	SM00355	0.0024	392	415	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.575	392	420	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	394	415	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.31	437	459	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	437	464	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	439	459	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1190 aa Download sequence Send to blast
MASVTLDPSS TITEGPPPPA LQAESIPTVD LNLLSQSELY SLSLCSPSAF NPRLRHDDVI 60 IPKIDRSVFN ESAGSRKQTY SRLRLAPASS APGPGPRSRT PHLRSNFPQT SFQNNTNDPE 120 NTQIVSLLKQ LFGSGQMNPS NLIPVRVDYS NFVPTPVPEL DNVGGVKRKR GPGRPRKGED 180 VVMKDIVVYQ NVVDDDRDKD KDKEIVNKDG EQVDLTGLGA MENPFGEELR KRTEGLVSAE 240 ELLGFLERLN GEWGSTRRKK RIVDASEFGN VLPKGWKLLI SVKKKEGRVW LHCRRYISPN 300 GRRFDTCKEV SSYLLSLHGE RNENVPAYAK SSETVEITNT CALVSTSDLR VQDGAEKESA 360 PSHNSSPAVG PGELQVLLNF GELSEVQVGD LLQCDKCNVT FNNKDDLLQH QLSSHRRKRS 420 RNGQSITDGV IIKDGKFECQ FCHKTFEERR RYNGHVGNHV KYQGKTAADG SLSINVGKCV 480 EPVVSSGAML TEVIVQDSVA SARDMTENVD VRADVGNNPA PPSKIEEDHM ETDDKLEGRC 540 EAMDTVPNKT NLCLSSEVVT LNNKDNNCCG TLADSLIVDN VTEGTNKDFH NQEGSSESCF 600 PISLTEKTCT NKSNVIVCSI IEEPKQESLL CSNGIVDSCG VSMEDGKFPP TLDESKVVTD 660 RFVDNESTNA LCSNLGVLDE NTLVSAEQVP CAEDYSGKNI DLLNGVSFLA ETSRDTRGLK 720 SSTGTPNCEE EGSTVDHVQG VLSGSIGEQK PNSTCDITND ECGSLVDPND NKLTMKEDSC 780 SFVLPPVEHV NIADRDVSDV SVCFLEEPER RIGDKSGLPS PARENSSGVE AQFFDGSKTT 840 SYEPKISELQ SVGSNKLGFP SGNNHAVQKV DECAIENEKG LALCSFFPAT DKRVSHAQDH 900 DSKVYQSTTE VNDQQSSASA LFSSTYVPQA STKEYTMNRS YSNPLNFDGL ENSRHRDQNV 960 VFGNSHVDPN LNSTHHNRYI TEKSTFQLSM DGTYAVQDNL HRRLETDRQG EVGVNLSESA 1020 FKGKTGDFES NFNMVFHSQS CDGGKVDEVG NSGKKIVTGF GCGNAKTNED AVAGSIWRTG 1080 VENVMQGGSV DNSTSAVQSS NCFQTYDVMS DKVQGLFGEN EKYDGTTGFD GLRSDRNEPV 1140 EYSFMSAHSL NSLQEEPRVL PYDVDIDQGF NSSFWLGKDD LMPNLADRNQ

Sequence ? help Back to Top

Protein Sequence Length: 1190 aa Download sequence Send to blast

MASVTLDPSS TITEGPPPPA LQAESIPTVD LNLLSQSELY SLSLCSPSAF NPRLRHDDVI  60
IPKIDRSVFN ESAGSRKQTY SRLRLAPASS APGPGPRSRT PHLRSNFPQT SFQNNTNDPE  120
NTQIVSLLKQ LFGSGQMNPS NLIPVRVDYS NFVPTPVPEL DNVGGVKRKR GPGRPRKGED  180
VVMKDIVVYQ NVVDDDRDKD KDKEIVNKDG EQVDLTGLGA MENPFGEELR KRTEGLVSAE  240
ELLGFLERLN GEWGSTRRKK RIVDASEFGN VLPKGWKLLI SVKKKEGRVW LHCRRYISPN  300
GRRFDTCKEV SSYLLSLHGE RNENVPAYAK SSETVEITNT CALVSTSDLR VQDGAEKESA  360
PSHNSSPAVG PGELQVLLNF GELSEVQVGD LLQCDKCNVT FNNKDDLLQH QLSSHRRKRS  420
RNGQSITDGV IIKDGKFECQ FCHKTFEERR RYNGHVGNHV KYQGKTAADG SLSINVGKCV  480
EPVVSSGAML TEVIVQDSVA SARDMTENVD VRADVGNNPA PPSKIEEDHM ETDDKLEGRC  540
EAMDTVPNKT NLCLSSEVVT LNNKDNNCCG TLADSLIVDN VTEGTNKDFH NQEGSSESCF  600
PISLTEKTCT NKSNVIVCSI IEEPKQESLL CSNGIVDSCG VSMEDGKFPP TLDESKVVTD  660
RFVDNESTNA LCSNLGVLDE NTLVSAEQVP CAEDYSGKNI DLLNGVSFLA ETSRDTRGLK  720
SSTGTPNCEE EGSTVDHVQG VLSGSIGEQK PNSTCDITND ECGSLVDPND NKLTMKEDSC  780
SFVLPPVEHV NIADRDVSDV SVCFLEEPER RIGDKSGLPS PARENSSGVE AQFFDGSKTT  840
SYEPKISELQ SVGSNKLGFP SGNNHAVQKV DECAIENEKG LALCSFFPAT DKRVSHAQDH  900
DSKVYQSTTE VNDQQSSASA LFSSTYVPQA STKEYTMNRS YSNPLNFDGL ENSRHRDQNV  960
VFGNSHVDPN LNSTHHNRYI TEKSTFQLSM DGTYAVQDNL HRRLETDRQG EVGVNLSESA  1020
FKGKTGDFES NFNMVFHSQS CDGGKVDEVG NSGKKIVTGF GCGNAKTNED AVAGSIWRTG  1080
VENVMQGGSV DNSTSAVQSS NCFQTYDVMS DKVQGLFGEN EKYDGTTGFD GLRSDRNEPV  1140
EYSFMSAHSL NSLQEEPRVL PYDVDIDQGF NSSFWLGKDD LMPNLADRNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613130.1	0.0	PREDICTED: uncharacterized protein LOC104106314
TrEMBL	A0A1J6K6Q9	0.0	A0A1J6K6Q9_NICAT; Methyl-cpg-binding domain-containing protein 8
STRING	XP_009613130.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19